Rorug04G0070400

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
N/A
Physical Location & Seq
Forward (+)
10832137 .. 10833911
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0070400.1

Sequence Viewer

Length: 177 bp
ATGCTTGCTCTGTACACAGCATTCTGGTGCTCAGAGAGTAAGTTCTGCTGCAATAGCAACAGAAAGGAGAAAGAACAAGGAGAGGAAAGTGAAAAGAGAGATGATAGACGATGTCCCATGAACACCTTGAACCCACTGTTGCCAAGATTCAAAAGTGTCAAGGAGACGGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.87

Weight (kDa)

8.82

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 168
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 2 cut(s) 130, 151
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BseMII CTCAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 32
BslFI GGGAC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1407I TGTACA 1 cut(s) 12
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 13
CviAII CATG 1 cut(s) 118
CviJI RGCY 1 cut(s) 170
CviKI_1 RGCY 1 cut(s) 170
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 31
Hsp92II CATG 1 cut(s) 121
LpnPI CCDG 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 32
MnlI CCTC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 54
NlaIII CATG 1 cut(s) 121
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 25
SatI GCNGC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 32
SetI ASST 1 cut(s) 128
SgeI CNNG 7 cut(s) 17, 37, 89, 130, 139, 156, 172
SmiMI CAYNNNNRTG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 138
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.