Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

31597838 .. 31600032

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCACCTTGTCAAATTTTGGTTCTTTTGTTAGCTGTGCTAGTGCTGGGATTAAGCCTACCATGTTCAGATGCTATTCGGACCAATAAGGTTAAGACCAGGACTAGCGTTTATGTCTCCCCTGAGTTTGTGTTGGGACCAGGGTCAGTTGCAGTCAAGTATTTCTATAACATTCACTTCCCAAGAGGTCATATTGCTATGAAGTATTTCAATGCTGAAGTGATCGATGAAGAAGGGAATCCTATTCCTCTTTATGATACTTATCTGCATCATTGGGTTCTTGAAAGATATTACGCCCAGACAAGTTATGTGGAGTCAAGTGGTTTCGAGGATAATAAAGATCCGGAGTTTAAGATTGTGAGAAATAGTGGATTGTGCCAGAATAATGTTCTTGGTCAGTACTATGGACTCGGGTCAGAAACACGAAAGACAGATACACATGTACCGGATCCTTTTGGAATAGAGATTGGCAACCCTGCAGAGATTCCTGCTGGATATGAGGAGAGATGGATGCTCAATGTTCATGCTATTGATACTCGGGGTGCAGAGGATAGGATGGGATGCACTGAATGCAGGTGTGATCTGTATAATGTAACAAAAGATGGACAAGGCCAGCCGTTGAGGCCTGGGTACACAGGGGGTTTGGAGTGCTGTTATGATGGTACACAGTGCAGCGTAAAACAAGGCTATAATGGTGTCAAGAGAAGCCTCTACTTGAGATACACTGTGAAGTGGGTTGATTGGTCCGATTCCATTGTGCCTGTCAAGATTTATATCTTTGATGTCACTGATAGAACAAATCATTCATCAGGACCCTCTCTTAAACATGATTGCCGGATCGAATATAATGTTGAGCCTTGCAGTACTGTCGATACGGTAAATGATCAGTGCTTTGACAATCAACGGGCAATGGTTACTATGCCAACTGGTGGTTATATCGTCTACGGTGTTGCCCATCAGCACACTGGGGGACGTGGCTCAACTCTGTATGGAGAGGACGGACGGGTTATCTGTTCATCAATACCAATATATGGGCAAAGCGAGGAAGTAGGAGACGAGGCTGGTTACATTGTGGGAATGTCAACTTGCTATCCACATCCTGGCTCTGTCAAAATAAAGGATGGGGAGACTCTGGTTCTGGCATCTAATTACAGCAGCTCGCAGCCGCACACAGGAGTCATGGGCCTCTTCTACATTTTGGTTGCGGAGGATCAGAAAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0030312 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0090066 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

408

Amino Acids

45.36

Weight (kDa)

5.31

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SURNod19	PF07712	32 - 403	4.4e-187	Stress up-regulated Nod 19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	564
Acc36I	ACCTGC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	3 cut(s)	929, 1031, 1100
AccI	GTMKAC	1 cut(s)	942
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	2 cut(s)	1166, 1205
AclWI	GGATC	5 cut(s)	335, 443, 456, 845, 1218
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	5 cut(s)	401, 444, 632, 664, 865
AfiI	CCNNNNNNNGG	4 cut(s)	929, 1031, 1100, 1172
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	211, 284
AjiI	CACGTC	1 cut(s)	974
AjnI	CCWGG	4 cut(s)	98, 139, 625, 1099
AluBI	AGCT	2 cut(s)	35, 1158
AluI	AGCT	2 cut(s)	35, 1158
Alw26I	GTCTC	3 cut(s)	121, 1047, 1121
AlwI	GGATC	5 cut(s)	335, 443, 456, 845, 1218
Ama87I	CYCGRG	2 cut(s)	410, 537
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	3 cut(s)	610, 623, 1183
ApeKI	GCWGC	3 cut(s)	672, 1155, 1162
ApoI	RAATTY	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	5 cut(s)	81, 137, 744, 812, 1183
AvaI	CYCGRG	2 cut(s)	410, 537
AvaII	GGWCC	4 cut(s)	81, 137, 744, 812
BaeI	ACNNNNGTAYC	4 cut(s)	426, 426, 459, 459
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	684, 1167, 1174
BccI	CCATC	6 cut(s)	501, 550, 596, 653, 963, 1115
BceAI	ACGGC	1 cut(s)	601
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciT130I	CCWGG	4 cut(s)	100, 141, 627, 1101
BclI	TGATCA	1 cut(s)	883
BcoDI	GTCTC	3 cut(s)	121, 1047, 1121
BfaI	CTAG	2 cut(s)	41, 105
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	673, 1156, 1163, 1166
BlsI	GCNGC	4 cut(s)	674, 1157, 1164, 1167
BmcAI	AGTACT	2 cut(s)	401, 865
Bme1390I	CCNGG	4 cut(s)	100, 141, 627, 1101
Bme18I	GGWCC	4 cut(s)	81, 137, 744, 812
BmeT110I	CYCGRG	2 cut(s)	410, 537
BmgBI	CACGTC	1 cut(s)	974
BmgT120I	GGNCC	5 cut(s)	81, 137, 744, 812, 1183
BmiI	GGNNCC	4 cut(s)	6, 138, 450, 814
BmrFI	CCNGG	4 cut(s)	100, 141, 627, 1101
BmrI	ACTGGG	1 cut(s)	975
BmsI	GCATC	5 cut(s)	61, 277, 501, 551, 1151
BmuI	ACTGGG	1 cut(s)	975
BoxI	GACNNNNGTC	2 cut(s)	142, 412
BpuEI	CTTGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	2 cut(s)	261, 773
BsaJI	CCNNGG	2 cut(s)	140, 626
BsaWI	WCCGGW	2 cut(s)	343, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	929, 1031, 1100, 1172
Bse1I	ACTGG	2 cut(s)	931, 970
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	2 cut(s)	261, 773
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	100, 141, 627, 1101
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	140, 626
BseGI	GGATG	5 cut(s)	516, 561, 566, 1096, 1126
BseJI	GATNNNNATC	2 cut(s)	261, 773
BseLI	CCNNNNNNNGG	4 cut(s)	929, 1031, 1100, 1172
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	931, 970
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	684, 1167, 1174
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	2 cut(s)	564, 691
BshFI	GGCC	3 cut(s)	612, 625, 1185
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	225
BsiHKCI	CYCGRG	2 cut(s)	410, 537
BsiSI	CCGG	3 cut(s)	344, 446, 835
BslFI	GGGAC	2 cut(s)	150, 984
BslI	CCNNNNNNNGG	4 cut(s)	929, 1031, 1100, 1172
BsmAI	GTCTC	3 cut(s)	121, 1047, 1121
BsmBI	CGTCTC	1 cut(s)	1047
BsmFI	GGGAC	2 cut(s)	150, 984
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	612, 625, 1185
BsoBI	CYCGRG	2 cut(s)	410, 537
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
BspACI	CCGC	2 cut(s)	1166, 1205
BspANI	GGCC	3 cut(s)	612, 625, 1185
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	6, 138, 450, 814
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	564
BspPI	GGATC	5 cut(s)	335, 443, 456, 845, 1218
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	931, 970
BssECI	CCNNGG	2 cut(s)	140, 626
BssMI	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
Bst2UI	CCWGG	4 cut(s)	100, 141, 627, 1101
Bst4CI	ACNGT	5 cut(s)	669, 727, 868, 877, 947
Bst6I	CTCTTC	1 cut(s)	1193
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	614, 1160
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	5 cut(s)	516, 561, 566, 1096, 1126
BstKTI	GATC	7 cut(s)	225, 343, 451, 583, 840, 886, 1213
BstMAI	GTCTC	3 cut(s)	121, 1047, 1121
BstMBI	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
BstMWI	GCNNNNNNNGC	2 cut(s)	570, 622
BstNI	CCWGG	4 cut(s)	100, 141, 627, 1101
BstNSI	RCATGY	1 cut(s)	443
BstPAI	GACNNNNGTC	2 cut(s)	142, 412
BstSCI	CCNGG	4 cut(s)	98, 139, 625, 1099
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	684, 1167, 1174
BstX2I	RGATCY	2 cut(s)	340, 448
BstYI	RGATCY	2 cut(s)	340, 448
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	612, 625, 1185
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	974
BtsCI	GGATG	5 cut(s)	516, 561, 566, 1096, 1126
BtsIMutI	CAGTG	6 cut(s)	564, 674, 723, 786, 893, 963
BveI	ACCTGC	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	614, 1160
Cfr13I	GGNCC	5 cut(s)	81, 137, 744, 812, 1183
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	5 cut(s)	400, 443, 631, 663, 864
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	5 cut(s)	63, 440, 524, 827, 1180
CviQI	GTAC	5 cut(s)	400, 443, 631, 663, 864
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	7 cut(s)	224, 342, 450, 582, 839, 885, 1212
DpnII	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
Eam1104I	CTCTTC	1 cut(s)	1193
EarI	CTCTTC	1 cut(s)	1193
Eco147I	AGGCCT	1 cut(s)	625
Eco47I	GGWCC	4 cut(s)	81, 137, 744, 812
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	410, 537
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	4 cut(s)	98, 139, 625, 1099
Esp3I	CGTCTC	1 cut(s)	1047
FaeI	CATG	5 cut(s)	66, 443, 527, 830, 1183
FaqI	GGGAC	2 cut(s)	150, 984
FatI	CATG	5 cut(s)	62, 439, 523, 826, 1179
FbaI	TGATCA	1 cut(s)	883
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	4 cut(s)	673, 1156, 1163, 1166
FokI	GGATG	5 cut(s)	523, 568, 573, 1083, 1133
Fsp4HI	GCNGC	4 cut(s)	673, 1156, 1163, 1166
FspBI	CTAG	2 cut(s)	41, 105
GluI	GCNGC	4 cut(s)	673, 1156, 1163, 1166
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	612, 625, 1185
HapII	CCGG	3 cut(s)	344, 446, 835
Hin1II	CATG	5 cut(s)	66, 443, 527, 830, 1183
HincII	GTYRAC	1 cut(s)	1083
HindII	GTYRAC	1 cut(s)	1083
HinfI	GANTC	7 cut(s)	238, 314, 408, 484, 749, 1129, 1176
HpaII	CCGG	3 cut(s)	344, 446, 835
Hpy166II	GTNNAC	4 cut(s)	633, 665, 943, 1083
Hpy188I	TCNGA	5 cut(s)	70, 81, 418, 748, 1215
Hpy188III	TCNNGA	5 cut(s)	281, 344, 700, 766, 810
Hpy8I	GTNNAC	4 cut(s)	633, 665, 943, 1083
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	5 cut(s)	669, 727, 868, 877, 947
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	8 cut(s)	152, 268, 479, 545, 564, 573, 672, 861
HpyF10VI	GCNNNNNNNGC	2 cut(s)	570, 622
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	973
Hsp92II	CATG	5 cut(s)	66, 443, 527, 830, 1183
Kpn2I	TCCGGA	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	883
Kzo9I	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
Lsp1109I	GCAGC	3 cut(s)	684, 1167, 1174
LweI	GCATC	5 cut(s)	61, 277, 501, 551, 1151
MaeI	CTAG	2 cut(s)	41, 105
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	4 cut(s)	592, 784, 913, 1064
MalI	GATC	7 cut(s)	224, 342, 450, 582, 839, 885, 1212
MboI	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
MboII	GAAGA	2 cut(s)	242, 1180
MflI	RGATCY	2 cut(s)	340, 448
MluCI	AATT	2 cut(s)	15, 1147
MlyI	GAGTC	4 cut(s)	323, 402, 1123, 1185
MroI	TCCGGA	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	4 cut(s)	53, 93, 351, 822
MspI	CCGG	3 cut(s)	344, 446, 835
MspR9I	CCNGG	4 cut(s)	100, 141, 627, 1101
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	4 cut(s)	100, 141, 627, 1101
MwoI	GCNNNNNNNGC	2 cut(s)	570, 622
NdeII	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
NlaIII	CATG	5 cut(s)	66, 443, 527, 830, 1183
NlaIV	GGNNCC	4 cut(s)	6, 138, 450, 814
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	564
PceI	AGGCCT	1 cut(s)	625
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	238, 484, 749
PflMI	CCANNNNNTGG	3 cut(s)	929, 1031, 1100
PkrI	GCNGC	4 cut(s)	674, 1157, 1164, 1167
PleI	GAGTC	4 cut(s)	322, 402, 1123, 1184
PpsI	GAGTC	4 cut(s)	322, 402, 1123, 1184
PpuMI	RGGWCCY	1 cut(s)	812
PscI	ACATGT	1 cut(s)	439
PshAI	GACNNNNGTC	2 cut(s)	142, 412
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	4 cut(s)	98, 139, 625, 1099
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	4 cut(s)	98, 139, 625, 1099
PspN4I	GGNNCC	4 cut(s)	6, 138, 450, 814
PspPI	GGNCC	5 cut(s)	81, 137, 744, 812, 1183
PspPPI	RGGWCCY	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	340, 448
RsaI	GTAC	5 cut(s)	401, 444, 632, 664, 865
RsaNI	GTAC	5 cut(s)	400, 443, 631, 663, 864
SaqAI	TTAA	4 cut(s)	53, 93, 351, 822
SatI	GCNGC	4 cut(s)	673, 1156, 1163, 1166
Sau3AI	GATC	7 cut(s)	222, 340, 448, 580, 837, 883, 1210
Sau96I	GGNCC	5 cut(s)	81, 137, 744, 812, 1183
ScaI	AGTACT	2 cut(s)	401, 865
SchI	GAGTC	4 cut(s)	323, 402, 1123, 1185
ScrFI	CCNGG	4 cut(s)	100, 141, 627, 1101
SetI	ASST	7 cut(s)	10, 37, 93, 190, 578, 976, 1160
SfaNI	GCATC	5 cut(s)	61, 277, 501, 551, 1151
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	4 cut(s)	81, 137, 744, 812
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	2 cut(s)	15, 1147
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	2 cut(s)	1166, 1205
SspI	AATATT	1 cut(s)	1222
SspMI	CTAG	2 cut(s)	41, 105
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	4 cut(s)	98, 139, 625, 1099
TaaI	ACNGT	5 cut(s)	669, 727, 868, 877, 947
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	4 cut(s)	225, 327, 840, 870
TasI	AATT	2 cut(s)	15, 1147
TatI	WGTACW	2 cut(s)	399, 863
TauI	GCSGC	1 cut(s)	1168
TfiI	GAWTC	3 cut(s)	238, 484, 749
Tru1I	TTAA	4 cut(s)	53, 93, 351, 822
Tru9I	TTAA	4 cut(s)	53, 93, 351, 822
TscAI	CASTG	6 cut(s)	571, 674, 730, 793, 893, 970
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	3 cut(s)	672, 1155, 1162
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	5 cut(s)	215, 243, 512, 795, 1005
TspGWI	ACGGA	1 cut(s)	1014
TspRI	CASTG	6 cut(s)	571, 674, 730, 793, 893, 970
Van91I	CCANNNNNTGG	3 cut(s)	929, 1031, 1100
VpaK11BI	GGWCC	4 cut(s)	81, 137, 744, 812
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	41, 105
ZrmI	AGTACT	2 cut(s)	401, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.