Rorug04G0402200

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
N/A
Physical Location & Seq
Reverse (-)
56682787 .. 56684193
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0402200.1

Sequence Viewer

Length: 159 bp
ATGGAAGGATTGAAGAATCTAACATATGAATCCAAAACCAGGATTTGCTTTTGGGCAAAGGAGATATGCTCTGATAGTGATTCCTCAACTACTGGTTCAGTTTATATGTTTCTCTTTTATTATGCTACTGTTCACATTGCAGCTCGTGGCCACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.93

Weight (kDa)

6.7

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 150
BauI CACGAG 1 cut(s) 144
BbvI GCAGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 40
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 53, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 39
BsnI GGCC 1 cut(s) 150
BspANI GGCC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 97
BssSI CACGAG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 130
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 150
CviJI RGCY 2 cut(s) 143, 150
CviKI_1 RGCY 2 cut(s) 143, 150
EaeI YGGCCR 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 38
FaiI YATR 6 cut(s) 25, 27, 67, 105, 107, 123
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspEI CC 9 cut(s) 25, 37, 38, 44, 46, 52, 78, 97, 132
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 150
HinfI GANTC 3 cut(s) 16, 29, 80
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 153
LpnPI CCDG 3 cut(s) 25, 52, 78
Lsp1109I GCAGC 1 cut(s) 152
MaeII ACGT 1 cut(s) 153
MboII GAAGA 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 150
MnlI CCTC 1 cut(s) 94
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 25
PfeI GAWTC 3 cut(s) 16, 29, 80
PkrI GCNGC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
SatI GCNGC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 40
SetI ASST 2 cut(s) 145, 156
SgeI CNNG 3 cut(s) 51, 52, 105
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 156
TfiI GAWTC 3 cut(s) 16, 29, 80
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.