Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57764241 .. 57764733

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0416200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATCTCGGAATTGGCAAAGTTGTAACTCAAACCCAAGTAGACTCAATTTTGGGCCGTAGGTATCGGCTTGCTACGCTGAACCCCCTTAAGGAATCTTGCCAAAAATACTTTTGGGCTCAAACAACTTCCATGGTAAATGGGAAAGCTAGAGTTGCCAAGGAAAGAATTGAAGCCATAGACGCGGAAAAAAACTTGGTGACTTTCAGAGTGATTGAGGGAGACCTTATGGAGCATTACAAGAGCTTCTTGATCACCATTCAAGCCACTCCAAAAGGCGAGGGCTGCTCCGTGCACTGGACTATGGAGTATGAGAAGCATCATGGCGATATTACCGACCGGCATACGCTGCTCCAGTTTGCAGTCAAGGTTTCCAACGACATCGATGTTCACCTTACTGCCCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

6.59

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	45 - 134	1.6e-27	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	91, 297
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	173, 263
AluBI	AGCT	2 cut(s)	149, 246
AluI	AGCT	2 cut(s)	149, 246
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	285, 349
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	211, 247, 383
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	272, 336
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	286, 350
BlsI	GCNGC	2 cut(s)	287, 351
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	132, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 297
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	302, 355
BseCI	ATCGAT	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	132, 159
BseLI	CCNNNNNNNGG	2 cut(s)	91, 297
BseNI	ACTGG	2 cut(s)	302, 355
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	272, 336
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	91, 297
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	121, 297
Bsp143I	GATC	2 cut(s)	4, 252
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	185
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	302, 355
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	132, 159
BssMI	GATC	2 cut(s)	4, 252
BssT1I	CCWWGG	2 cut(s)	132, 159
BstAFI	CTTAAG	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	2 cut(s)	7, 255
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	4, 252
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 155, 182, 285, 349
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	272, 336
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	384
CseI	GACGC	1 cut(s)	191
CviAII	CATG	2 cut(s)	133, 323
CviJI	RGCY	8 cut(s)	57, 70, 119, 149, 176, 246, 266, 285
CviKI_1	RGCY	8 cut(s)	57, 70, 119, 149, 176, 246, 266, 285
DpnI	GATC	2 cut(s)	6, 254
DpnII	GATC	2 cut(s)	4, 252
Eco130I	CCWWGG	2 cut(s)	132, 159
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	132, 159
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	132, 159
FaeI	CATG	2 cut(s)	136, 326
FaiI	YATR	7 cut(s)	134, 179, 230, 305, 312, 324, 345
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	2 cut(s)	132, 322
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	286, 350
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	286, 350
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	286, 350
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	340
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	136, 326
HinfI	GANTC	2 cut(s)	44, 95
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	3 cut(s)	211, 247, 383
Hpy166II	GTNNAC	3 cut(s)	43, 295, 391
Hpy188I	TCNGA	2 cut(s)	11, 209
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	3 cut(s)	43, 295, 391
HpyCH4V	TGCA	2 cut(s)	295, 362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 155, 182, 285, 349
Hsp92II	CATG	2 cut(s)	136, 326
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	4, 252
LmnI	GCTCC	3 cut(s)	232, 293, 357
LpnPI	CCDG	3 cut(s)	283, 353, 368
Lsp1109I	GCAGC	2 cut(s)	272, 336
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	25, 199
MalI	GATC	2 cut(s)	6, 254
MboI	GATC	2 cut(s)	4, 252
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	121, 297
MluCI	AATT	3 cut(s)	12, 48, 168
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	2 cut(s)	211, 274
MseI	TTAA	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	5 cut(s)	76, 155, 182, 285, 349
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	4, 252
NlaIII	CATG	2 cut(s)	136, 326
NmuCI	GTSAC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	287, 351
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	286, 350
Sau3AI	GATC	2 cut(s)	4, 252
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	121, 297
SetI	ASST	6 cut(s)	65, 151, 228, 248, 372, 396
SfaNI	GCATC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	12, 48, 168
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	132, 159
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	12, 48, 168
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	285, 349
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.