Rorug05G0108300

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Forward (+)
9598841 .. 9599588
748 bp
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UTR
Exon/CDS
Intron
Rorug05G0108300.1

Sequence Viewer

Length: 438 bp
ATGAGGAAAAGTTGCAATCTGGAACTAGAACTTCGCCTTTTTTCTTCTGATGAATGTTCCAGCTCCCCTCATCACCAATCAAGTCAAGACCTGCAACAGCAACAGCAGCTAACCATGCAACAGAAACAGCAGCTAACCATTCTCTACAATGGAGTAATGTGCGTTTCTGATGTCACTGAGCTTCAGGCTAGAGCCATTCTTTGTGCGGCAAACAATGAGATAGGGGAAACAGTGGTAAAGATTAGTACTATTCCAAGTCCGAGTCCAAGTGGGTCGTATGAATTATCTTCACCAAGCCTGCACTACTCTCCACTATGCAGCAGCCGTGTTCCAGCAGGTGGTCTATCCTCTATGAAGAAGTCACTGCAAAATTTTCTCCAAAAGAGAAAACATCGGAGCCAAGCAACACATCCCTACCATAGAAGAATTGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.2

Weight (kDa)

9.1

Isoelectric Point (pI)

88.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 40 - 70 6.7e-11 tify domain
Jas_motif PF09425 119 - 139 1.1e-06 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 326
Acc36I ACCTGC 2 cut(s) 99, 326
AccB7I CCANNNNNTGG 1 cut(s) 338
AciI CCGC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 338
AluBI AGCT 4 cut(s) 63, 109, 133, 181
AluI AGCT 4 cut(s) 63, 109, 133, 181
ApeKI GCWGC 4 cut(s) 106, 130, 318, 321
ApoI RAATTY 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 65, 282
BbvI GCAGC 4 cut(s) 118, 142, 330, 333
BceAI ACGGC 1 cut(s) 309
BfaI CTAG 2 cut(s) 26, 189
BfuAI ACCTGC 2 cut(s) 99, 326
BisI GCNGC 5 cut(s) 107, 131, 207, 319, 322
BlsI GCNGC 5 cut(s) 108, 132, 208, 320, 323
BmcAI AGTACT 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 4 cut(s) 118, 142, 330, 333
BsgI GTGCAG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 2 cut(s) 99, 326
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 106, 115
BstV1I GCAGC 4 cut(s) 118, 142, 330, 333
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 174, 237, 362
BveI ACCTGC 2 cut(s) 99, 326
Cac8I GCNNGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 115
CviJI RGCY 9 cut(s) 63, 109, 133, 181, 188, 194, 297, 324, 399
CviKI_1 RGCY 9 cut(s) 63, 109, 133, 181, 188, 194, 297, 324, 399
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 167
FaeI CATG 1 cut(s) 118
FaiI YATR 5 cut(s) 116, 279, 316, 353, 420
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 107, 131, 207, 319, 322
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 5 cut(s) 107, 131, 207, 319, 322
FspBI CTAG 2 cut(s) 26, 189
GluI GCNGC 5 cut(s) 107, 131, 207, 319, 322
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 262
HphI GGTGA 2 cut(s) 65, 282
Hpy188I TCNGA 4 cut(s) 49, 169, 261, 396
Hpy188III TCNNGA 2 cut(s) 20, 86
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 6 cut(s) 15, 94, 118, 301, 318, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 115
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 118
LmnI GCTCC 2 cut(s) 68, 396
LpnPI CCDG 7 cut(s) 5, 73, 104, 170, 311, 321, 345
Lsp1109I GCAGC 4 cut(s) 118, 142, 330, 333
MaeI CTAG 2 cut(s) 26, 189
MaeIII GTNAC 2 cut(s) 172, 360
MboII GAAGA 4 cut(s) 36, 279, 367, 435
MluCI AATT 4 cut(s) 281, 370, 426, 433
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 2 cut(s) 78, 358
MwoI GCNNNNNNNGC 2 cut(s) 106, 115
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 2 cut(s) 172, 360
PaqCI CACCTGC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 5 cut(s) 108, 132, 208, 320, 323
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 398
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SatI GCNGC 5 cut(s) 107, 131, 207, 319, 322
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 1 cut(s) 271
SetI ASST 6 cut(s) 65, 93, 111, 135, 183, 340
Sse9I AATT 4 cut(s) 281, 370, 426, 433
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 26, 189
TaaI ACNGT 1 cut(s) 232
TasI AATT 4 cut(s) 281, 370, 426, 433
TatI WGTACW 1 cut(s) 245
TauI GCSGC 1 cut(s) 209
TscAI CASTG 3 cut(s) 181, 237, 369
TseFI GTSAC 2 cut(s) 172, 360
TseI GCWGC 4 cut(s) 106, 130, 318, 321
Tsp45I GTSAC 2 cut(s) 172, 360
TspDTI ATGAA 3 cut(s) 66, 294, 368
TspRI CASTG 3 cut(s) 181, 237, 369
Van91I CCANNNNNTGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 370
XspI CTAG 2 cut(s) 26, 189
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.