Rorug05G0132000

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Forward (+)
11774331 .. 11777852
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0132000.1

Sequence Viewer

Length: 1485 bp
ATGTGCAGCTTGTCTATGCCAATTGGGATGGAGAATTATCAAGGCGATTTAACTGACATACTTCGAGCTGGTGCTGCTACAGGATCATCCTCATCATCGGCTTATCATTCCGAAACAATGAATTCCGACAGCTGGCAGTTTTCATCCGATGATAACTATTCTATGAAATTCTCGACATCAATGGCCATGGAAGAAGTAGAAGACGCAAGGGACAATTTCGGCGATCCGTTTTCATCGTACATACGCGATCCACTTCTTCACGAGCTGTCGTCCACTTCCATCGGCGGCTTTTTCAGCAGCCCAAATTCGACTCCAGAAATGAACATCAGTGTAGATATGGAAGCTCGTGCTGCGCCGTTTGGTGCTCATGTGCCTGGTCACCATCATCAAGGTGAGGTTACTAAGAGGCCTTGCAACAACATATTCTCTCGCATGCTTCAGATCTCCCCCGGGAAGCTAGGCGGCGACGTGGCGGGGTGTGATTCGGTGGCGGTGTTGGGGTCACCGAGGGGGGGAGGAGGAGGAATCAAGGCGGTGCCTGGTGGTGTTATGGTTGGAAGCGACATGATTAATGCAAACAGCTCAAAAGGTTGCTTGCTCGAGAACACCGGAGTTGGGGTGCAGATCTCATCTCCACGGAATCCGGGTATCAAGCGAAGGAAGAGCCAGGCGAAGAAGGTGGTATGTATTCCAGCGCCAGCAGCAGCAAACAGTAGGCCAACTGGAGAAGTAGTTCCATCTGATCTGTGGGCATGGAGAAAGTACGGTCAGAAACCCATCAAAGGTTCACCTTATCCAAGAGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCTCAGCAAGGAAACAAGTAGAGCGTAGCCGGACTGATCCAAACATGTTGGTCATCACCTACACTTCCGAGCACAACCATCCCTGGCCAACCCAGAGAAATGCTCTCGCCGGCTCAACCCGATCCCAGCCATCAAAAGCCGGTGCCGGTTCAAAGACCTCTCCTAATACTGCTCATCACCAAAAGCCAGATAGCCCAGCAAAGGAAGAACAAAAGGCTGCAGCTGACAGCATGAACGAGAATAATCATGTACTGTCTCCAGTTAATGCAACTGTTGGAAGTAGTTCAACAGTTAAAGAAGAGTTTGAGGACATTGAGAAGCTGCAATTGGAGCTTGATCATCATGATCCCCATCATCAGCATGATAGTGATCATCACCAGTTCAGTAATCATGATCAAGGTTTTCCTTACAGACCATCAATGCCTGAACAGTCCAACAACCAATCAGAGGATTTCTTCGCTGATTTAGGAGAAATTGAAGCTGACCCACTAAACCTCTTGTTCTCACAGTGTTTCACATCAGATGAACAGCAAAAGGGGGGAAACAAGGCTGCCTTGGATCCATTCAATCTCTTTGATTGGTCTGGAGATCAAAACACCAACACCCCCAACAACAATCCTTCATTTGGTCATGAAGCCAAGAGGCGTTTATAA

Protein Analysis

494

Amino Acids

53.57

Weight (kDa)

5.98

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 248 - 305 4.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1483
AccB1I GGYRCC 2 cut(s) 535, 974
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 285, 462, 473, 491, 533
AclWI GGATC 8 cut(s) 91, 218, 242, 863, 948, 1172, 1385, 1398
AcoI YGGCCR 2 cut(s) 183, 917
AcsI RAATTY 3 cut(s) 121, 167, 304
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 3 cut(s) 239, 764, 1083
AfiI CCNNNNNNNGG 7 cut(s) 132, 512, 615, 782, 1033, 1279, 1457
AflIII ACRYGT 1 cut(s) 876
AgsI TTSAA 4 cut(s) 984, 1119, 1310, 1399
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 4 cut(s) 373, 538, 666, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
Alw21I GWGCWC 2 cut(s) 367, 906
Alw26I GTCTC 1 cut(s) 1092
AlwI GGATC 8 cut(s) 91, 218, 242, 863, 948, 1172, 1385, 1398
Ama87I CYCGRG 2 cut(s) 449, 599
AoxI GGCC 4 cut(s) 183, 407, 716, 917
ApoI RAATTY 3 cut(s) 121, 167, 304
AseI ATTAAT 1 cut(s) 570
Asp700I GAANNNNTTC 2 cut(s) 732, 1114
AspLEI GCGC 2 cut(s) 355, 697
AsuC2I CCSGG 3 cut(s) 450, 451, 645
AsuHPI GGTGA 7 cut(s) 371, 404, 495, 780, 880, 1001, 1199
AvaI CYCGRG 2 cut(s) 449, 599
BalI TGGCCA 2 cut(s) 185, 919
BamHI GGATCC 1 cut(s) 1390
BanI GGYRCC 2 cut(s) 535, 974
BauI CACGAG 2 cut(s) 260, 345
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 367, 906
BccI CCATC 9 cut(s) 22, 287, 390, 745, 785, 918, 970, 1191, 1255
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 4 cut(s) 375, 540, 668, 916
BclI TGATCA 3 cut(s) 1168, 1201, 1225
BcnI CCSGG 3 cut(s) 450, 451, 645
BcoDI GTCTC 1 cut(s) 1092
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 3 cut(s) 78, 808, 1050
BfoI RGCGCY 1 cut(s) 698
BglII AGATCT 2 cut(s) 441, 624
BlpI GCTNAGC 1 cut(s) 835
Bme1390I CCNGG 7 cut(s) 375, 450, 451, 540, 645, 668, 916
BmeT110I CYCGRG 2 cut(s) 449, 599
BmgBI CACGTC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 537, 976, 1392
BmrFI CCNGG 7 cut(s) 375, 450, 451, 540, 645, 668, 916
BmsI GCATC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 919, 951
BpmI CTGGAG 4 cut(s) 297, 744, 1074, 1437
Bpu1102I GCTNAGC 1 cut(s) 835
BpuMI CCSGG 3 cut(s) 450, 451, 645
BsaBI GATNNNNATC 2 cut(s) 1182, 1200
BsaJI CCNNGG 7 cut(s) 186, 448, 449, 506, 635, 914, 1386
BsaWI WCCGGW 1 cut(s) 608
BsaXI ACNNNNNCTCC 4 cut(s) 603, 633, 717, 747
Bsc4I CCNNNNNNNGG 7 cut(s) 132, 512, 615, 782, 1033, 1279, 1457
Bse118I RCCGGY 3 cut(s) 941, 971, 977
Bse1I ACTGG 3 cut(s) 727, 1091, 1210
Bse8I GATNNNNATC 2 cut(s) 1182, 1200
BseBI CCWGG 4 cut(s) 375, 540, 668, 916
BseDI CCNNGG 7 cut(s) 186, 448, 449, 506, 635, 914, 1386
BseGI GGATG 4 cut(s) 33, 86, 143, 910
BseJI GATNNNNATC 2 cut(s) 1182, 1200
BseLI CCNNNNNNNGG 7 cut(s) 132, 512, 615, 782, 1033, 1279, 1457
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 3 cut(s) 727, 1091, 1210
BseRI GAGGAG 2 cut(s) 531, 534
BseYI CCCAGC 2 cut(s) 957, 1027
BsgI GTGCAG 2 cut(s) 25, 641
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 185, 409, 718, 919
BshNI GGYRCC 2 cut(s) 535, 974
BsiHKAI GWGCWC 2 cut(s) 367, 906
BsiHKCI CYCGRG 2 cut(s) 449, 599
BsiSI CCGG 7 cut(s) 450, 609, 644, 862, 942, 972, 978
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 7 cut(s) 132, 512, 615, 782, 1033, 1279, 1457
BsmAI GTCTC 1 cut(s) 1092
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 4 cut(s) 185, 409, 718, 919
BsoBI CYCGRG 2 cut(s) 449, 599
Bsp1286I GDGCHC 2 cut(s) 367, 906
Bsp1720I GCTNAGC 1 cut(s) 835
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 5 cut(s) 285, 462, 473, 491, 533
BspANI GGCC 4 cut(s) 185, 409, 718, 919
BspCNI CTCAG 1 cut(s) 848
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 3 cut(s) 1174, 1222, 1462
BspLI GGNNCC 3 cut(s) 537, 976, 1392
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 8 cut(s) 91, 218, 242, 863, 948, 1172, 1385, 1398
BspQI GCTCTTC 1 cut(s) 656
BspT107I GGYRCC 2 cut(s) 535, 974
BsrFI RCCGGY 3 cut(s) 941, 971, 977
BsrI ACTGG 3 cut(s) 727, 1091, 1210
BssAI RCCGGY 3 cut(s) 941, 971, 977
BssECI CCNNGG 7 cut(s) 186, 448, 449, 506, 635, 914, 1386
BssSI CACGAG 2 cut(s) 260, 345
BssT1I CCWWGG 2 cut(s) 186, 1386
Bst2BI CACGAG 2 cut(s) 260, 345
Bst2UI CCWGG 4 cut(s) 375, 540, 668, 916
Bst4CI ACNGT 7 cut(s) 713, 767, 1086, 1105, 1123, 1263, 1341
Bst6I CTCTTC 2 cut(s) 656, 1125
BstC8I GCNNGC 5 cut(s) 134, 434, 596, 699, 943
BstDEI CTNAG 2 cut(s) 402, 835
BstDSI CCRYGG 2 cut(s) 186, 635
BstEII GGTNACC 2 cut(s) 377, 501
BstF5I GGATG 4 cut(s) 33, 86, 143, 910
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 2 cut(s) 355, 697
BstMAI GTCTC 1 cut(s) 1092
BstMWI GCNNNNNNNGC 5 cut(s) 74, 294, 350, 701, 1162
BstNI CCWGG 4 cut(s) 375, 540, 668, 916
BstNSI RCATGY 2 cut(s) 436, 880
BstPI GGTNACC 2 cut(s) 377, 501
BstSCI CCNGG 7 cut(s) 373, 448, 449, 538, 643, 666, 914
BstSFI CTRYAG 3 cut(s) 78, 808, 1050
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 3 cut(s) 441, 624, 1390
BstYI RGATCY 3 cut(s) 441, 624, 1390
BsuRI GGCC 4 cut(s) 185, 409, 718, 919
BtgI CCRYGG 2 cut(s) 186, 635
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 4 cut(s) 33, 86, 143, 910
BtsIMutI CAGTG 2 cut(s) 334, 1346
Cac8I GCNNGC 5 cut(s) 134, 434, 596, 699, 943
CciI TCATGA 3 cut(s) 1174, 1222, 1462
CfoI GCGC 2 cut(s) 355, 697
Cfr10I RCCGGY 3 cut(s) 941, 971, 977
Cfr9I CCCGGG 1 cut(s) 449
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 238, 763, 1082
CviQI GTAC 3 cut(s) 238, 763, 1082
DdeI CTNAG 2 cut(s) 402, 835
EaeI YGGCCR 2 cut(s) 183, 917
Eam1104I CTCTTC 2 cut(s) 656, 1125
EarI CTCTTC 2 cut(s) 656, 1125
Eco130I CCWWGG 2 cut(s) 186, 1386
Eco147I AGGCCT 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 422
Eco88I CYCGRG 2 cut(s) 449, 599
Eco91I GGTNACC 2 cut(s) 377, 501
EcoO65I GGTNACC 2 cut(s) 377, 501
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 4 cut(s) 373, 538, 666, 914
EcoT14I CCWWGG 2 cut(s) 186, 1386
ErhI CCWWGG 2 cut(s) 186, 1386
FalI AAGNNNNNCTT 2 cut(s) 1370, 1402
FaqI GGGAC 1 cut(s) 224
FauI CCCGC 1 cut(s) 466
FbaI TGATCA 3 cut(s) 1168, 1201, 1225
FokI GGATG 4 cut(s) 40, 73, 130, 897
FspBI CTAG 1 cut(s) 458
GlaI GCGC 2 cut(s) 354, 696
GsaI CCCAGC 2 cut(s) 961, 1031
GsuI CTGGAG 4 cut(s) 297, 744, 1074, 1437
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 4 cut(s) 185, 409, 718, 919
HapII CCGG 7 cut(s) 450, 609, 644, 862, 942, 972, 978
HgaI GACGC 1 cut(s) 212
HhaI GCGC 2 cut(s) 355, 697
Hin6I GCGC 2 cut(s) 353, 695
HinP1I GCGC 2 cut(s) 353, 695
HinfI GANTC 4 cut(s) 310, 482, 525, 640
HpaII CCGG 7 cut(s) 450, 609, 644, 862, 942, 972, 978
HphI GGTGA 7 cut(s) 371, 404, 495, 780, 880, 1001, 1199
Hpy166II GTNNAC 2 cut(s) 273, 788
Hpy188I TCNGA 9 cut(s) 112, 127, 148, 441, 742, 771, 901, 1279, 1354
Hpy188III TCNNGA 8 cut(s) 172, 260, 314, 601, 1175, 1223, 1416, 1463
Hpy8I GTNNAC 2 cut(s) 273, 788
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 651, 670, 1461
HpyCH4III ACNGT 7 cut(s) 713, 767, 1086, 1105, 1123, 1263, 1341
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 8 cut(s) 6, 414, 575, 622, 816, 1052, 1100, 1156
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 294, 350, 701, 1162
HpyF3I CTNAG 2 cut(s) 402, 835
HpySE526I ACGT 1 cut(s) 468
HspAI GCGC 2 cut(s) 353, 695
KroI GCCGGC 1 cut(s) 941
KroNI GCCGGC 1 cut(s) 943
Ksp22I TGATCA 3 cut(s) 1168, 1201, 1225
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 1 cut(s) 1162
LweI GCATC 1 cut(s) 803
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 4 cut(s) 377, 397, 501, 803
MboII GAAGA 8 cut(s) 203, 212, 248, 673, 685, 1049, 1142, 1279
MfeI CAATTG 2 cut(s) 21, 1157
MflI RGATCY 3 cut(s) 441, 624, 1390
MhlI GDGCHC 2 cut(s) 367, 906
MlsI TGGCCA 2 cut(s) 185, 919
MluCI AATT 8 cut(s) 21, 34, 121, 167, 214, 304, 1157, 1305
MluNI TGGCCA 2 cut(s) 185, 919
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 4 cut(s) 150, 535, 1087, 1290
Mox20I TGGCCA 2 cut(s) 185, 919
MroNI GCCGGC 1 cut(s) 941
MroXI GAANNNNTTC 2 cut(s) 732, 1114
MscI TGGCCA 2 cut(s) 185, 919
MseI TTAA 4 cut(s) 50, 570, 1095, 1125
MslI CAYNNNNRTG 3 cut(s) 390, 1191, 1197
Msp20I TGGCCA 2 cut(s) 185, 919
MspA1I CMGCKG 2 cut(s) 132, 1055
MspI CCGG 7 cut(s) 450, 609, 644, 862, 942, 972, 978
MspR9I CCNGG 7 cut(s) 375, 450, 451, 540, 645, 668, 916
MunI CAATTG 2 cut(s) 21, 1157
MvaI CCWGG 4 cut(s) 375, 540, 668, 916
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 74, 294, 350, 701, 1162
NaeI GCCGGC 1 cut(s) 943
NciI CCSGG 3 cut(s) 450, 451, 645
NcoI CCATGG 1 cut(s) 186
NgoMIV GCCGGC 1 cut(s) 941
NlaIV GGNNCC 3 cut(s) 537, 976, 1392
NmuCI GTSAC 2 cut(s) 377, 501
NspI RCATGY 2 cut(s) 436, 880
PaeI GCATGC 1 cut(s) 436
PaeR7I CTCGAG 1 cut(s) 599
PagI TCATGA 3 cut(s) 1174, 1222, 1462
PceI AGGCCT 1 cut(s) 409
PciI ACATGT 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 656
PdiI GCCGGC 1 cut(s) 943
PdmI GAANNNNTTC 2 cut(s) 732, 1114
PfeI GAWTC 3 cut(s) 482, 525, 640
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 570
PsiI TTATAA 1 cut(s) 1483
Psp6I CCWGG 4 cut(s) 373, 538, 666, 914
PspEI GGTNACC 2 cut(s) 377, 501
PspFI CCCAGC 2 cut(s) 957, 1027
PspGI CCWGG 4 cut(s) 373, 538, 666, 914
PspN4I GGNNCC 3 cut(s) 537, 976, 1392
PstI CTGCAG 1 cut(s) 1054
PsuI RGATCY 3 cut(s) 441, 624, 1390
PvuII CAGCTG 2 cut(s) 132, 1055
RsaI GTAC 3 cut(s) 239, 764, 1083
RsaNI GTAC 3 cut(s) 238, 763, 1082
RseI CAYNNNNRTG 3 cut(s) 390, 1191, 1197
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 4 cut(s) 50, 570, 1095, 1125
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 7 cut(s) 375, 450, 451, 540, 645, 668, 916
SduI GDGCHC 2 cut(s) 367, 906
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 3 cut(s) 78, 808, 1050
Sfr274I CTCGAG 1 cut(s) 599
SlaI CTCGAG 1 cut(s) 599
SmaI CCCGGG 1 cut(s) 451
SmiMI CAYNNNNRTG 3 cut(s) 390, 1191, 1197
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SphI GCATGC 1 cut(s) 436
Sse9I AATT 8 cut(s) 21, 34, 121, 167, 214, 304, 1157, 1305
SseBI AGGCCT 1 cut(s) 409
SsiI CCGC 5 cut(s) 285, 462, 473, 491, 533
SspMI CTAG 1 cut(s) 458
StuI AGGCCT 1 cut(s) 409
StyD4I CCNGG 7 cut(s) 373, 448, 449, 538, 643, 666, 914
StyI CCWWGG 2 cut(s) 186, 1386
TaaI ACNGT 7 cut(s) 713, 767, 1086, 1105, 1123, 1263, 1341
TaiI ACGT 1 cut(s) 471
TaqI TCGA 4 cut(s) 64, 173, 308, 600
TasI AATT 8 cut(s) 21, 34, 121, 167, 214, 304, 1157, 1305
TatI WGTACW 1 cut(s) 1081
TauI GCSGC 2 cut(s) 288, 465
TfiI GAWTC 3 cut(s) 482, 525, 640
Tru1I TTAA 4 cut(s) 50, 570, 1095, 1125
Tru9I TTAA 4 cut(s) 50, 570, 1095, 1125
TscAI CASTG 2 cut(s) 334, 1346
TseFI GTSAC 2 cut(s) 377, 501
Tsp45I GTSAC 2 cut(s) 377, 501
TspDTI ATGAA 9 cut(s) 132, 134, 179, 222, 335, 1079, 1371, 1443, 1479
TspGWI ACGGA 2 cut(s) 216, 652
TspMI CCCGGG 1 cut(s) 449
TspRI CASTG 2 cut(s) 334, 1346
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 3 cut(s) 121, 167, 304
XceI RCATGY 2 cut(s) 436, 880
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XhoI CTCGAG 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 449
XmnI GAANNNNTTC 2 cut(s) 732, 1114
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.