Rorug05G0156900

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Forward (+)
14634808 .. 14637328
2521 bp
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UTR
Exon/CDS
Intron
Rorug05G0156900.1

Sequence Viewer

Length: 762 bp
ATGCCAGTGGCAAGACCTGAAACATCGGATTCGAGAGTCATTGCTCATGTAGATATGGACTGCTTCTACGTTCAAGTGGAGCAAGGGAAAAATCCGGAGTTAAGGGGCTTACCTACGGCTGTGGTACAGTATAACTCATGGCAAGGTGGGGGTTTGATTGCTGTCAGCTATGAGGCCCGGAGATGCGGTGTGAAACATTCTATGCAAGGTGCTGAGTCAAAGCAAGTCTGCCCACAAATTCAGCTGGTCCAAGTCCCAGTAGCACGGGGTAAAGCTGACCTGAACTCATACTGGAGTGCAGGTTCAGAGGTGGTTTCTATTCTATCAAGGAAGGGTCAATGCGAAAGGGCTTCAATTGACGAAGTGTATCTTGACCTTACTGATGCAGCAGAAACCATGTTAGCTGAAGCTCCTCCAGAAAGATCCATCAATTTGCAGAACACAACAACAGAATATTTAGCATCTAGGTTCCATTATTCATTCCTCTGGGACGGAAGTGAAGCCAAAGAAAATGCGAGTAGATGGCTCTGCAAAAGCAATGCTGATCGCCGTGATAAGCTGCTAGCTTGTGGGGCTCTCATTGTTGCAGAACTTAGGAGACAGAATTCACTTGTTCAGCTGGCATCGCTCATAATAAGGAAACAGTTTGGAGGAGAGCTGGGGAGTAGTTTACAAAGTGTTTTGGGTGTTAACACTGTTGGAGATTCATTGCAGTTTTCAGAGGAAAAGCGACAAGAACACTATGGAATCAATACGGGGTAA

Protein Analysis

253

Amino Acids

27.91

Weight (kDa)

5.88

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 17 - 151 4.5e-29 impB/mucB/samB family
POLH-Rev1_HhH PF21704 214 - 253 3.9e-07 DNApol eta/Rev1, HhH motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 290
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 2 cut(s) 237, 604
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 2 cut(s) 74, 354
AloI GAACNNNNNNTCC 2 cut(s) 286, 318
AluBI AGCT 9 cut(s) 168, 244, 275, 404, 410, 559, 566, 619, 658
AluI AGCT 9 cut(s) 168, 244, 275, 404, 410, 559, 566, 619, 658
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 1 cut(s) 417
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 386, 559
ApoI RAATTY 2 cut(s) 237, 604
AspS9I GGNCC 2 cut(s) 175, 247
AsuC2I CCSGG 1 cut(s) 178
AsuNHI GCTAGC 1 cut(s) 562
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 398, 546
BccI CCATC 2 cut(s) 434, 516
BceAI ACGGC 2 cut(s) 132, 534
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 2 cut(s) 465, 563
BfuAI ACCTGC 1 cut(s) 290
BisI GCNGC 2 cut(s) 387, 560
BlsI GCNGC 2 cut(s) 388, 561
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 175, 247
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 4 cut(s) 173, 373, 470, 632
BmtI GCTAGC 1 cut(s) 566
BmuI ACTGGG 1 cut(s) 251
BpmI CTGGAG 2 cut(s) 313, 399
BpuMI CCSGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 4 cut(s) 172, 202, 286, 316
Bse1I ACTGG 3 cut(s) 5, 257, 296
Bse3DI GCAATG 3 cut(s) 39, 544, 707
BseAI TCCGGA 1 cut(s) 94
BseMI GCAATG 3 cut(s) 39, 544, 707
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 5, 257, 296
BseRI GAGGAG 2 cut(s) 402, 666
BseXI GCAGC 2 cut(s) 398, 546
BseYI CCCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 176
BsiSI CCGG 2 cut(s) 95, 178
BslFI GGGAC 2 cut(s) 239, 503
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 2 cut(s) 239, 503
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 422, 544
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 1 cut(s) 417
BsrDI GCAATG 3 cut(s) 39, 544, 707
BsrI ACTGG 3 cut(s) 5, 257, 296
BssMI GATC 2 cut(s) 422, 544
Bst4CI ACNGT 3 cut(s) 129, 645, 697
BstC8I GCNNGC 2 cut(s) 564, 621
BstDEI CTNAG 2 cut(s) 213, 593
BstKTI GATC 2 cut(s) 425, 547
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 2 cut(s) 422, 544
BstMWI GCNNNNNNNGC 2 cut(s) 572, 625
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 398, 546
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 12, 693
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 564, 621
Cfr13I GGNCC 2 cut(s) 175, 247
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 47, 138, 397
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 2 cut(s) 213, 593
DpnI GATC 2 cut(s) 424, 546
DpnII GATC 2 cut(s) 422, 544
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 3 cut(s) 50, 141, 400
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 2 cut(s) 239, 503
FatI CATG 3 cut(s) 46, 137, 396
Fnu4HI GCNGC 2 cut(s) 387, 560
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 387, 560
FspBI CTAG 2 cut(s) 465, 563
GluI GCNGC 2 cut(s) 387, 560
GsaI CCCAGC 1 cut(s) 662
GsuI CTGGAG 2 cut(s) 313, 399
HaeIII GGCC 1 cut(s) 176
HapII CCGG 2 cut(s) 95, 178
Hin1II CATG 3 cut(s) 50, 141, 400
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 5 cut(s) 29, 36, 215, 704, 747
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 2 cut(s) 95, 178
Hpy166II GTNNAC 2 cut(s) 671, 691
Hpy188I TCNGA 3 cut(s) 28, 307, 721
Hpy188III TCNNGA 4 cut(s) 33, 95, 371, 416
Hpy8I GTNNAC 2 cut(s) 671, 691
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 3 cut(s) 129, 645, 697
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 7 cut(s) 205, 299, 386, 436, 531, 587, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 625
HpyF3I CTNAG 2 cut(s) 213, 593
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 50, 141, 400
Kpn2I TCCGGA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 2 cut(s) 422, 544
LmnI GCTCC 2 cut(s) 79, 415
Lsp1109I GCAGC 2 cut(s) 398, 546
LweI GCATC 4 cut(s) 173, 373, 470, 632
MaeI CTAG 2 cut(s) 465, 563
MaeII ACGT 1 cut(s) 69
MalI GATC 2 cut(s) 424, 546
MboI GATC 2 cut(s) 422, 544
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 4 cut(s) 237, 354, 430, 604
MlyI GAGTC 2 cut(s) 45, 224
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 6 cut(s) 166, 301, 423, 494, 644, 715
MroI TCCGGA 1 cut(s) 94
MseI TTAA 2 cut(s) 101, 690
MspA1I CMGCKG 2 cut(s) 244, 619
MspI CCGG 2 cut(s) 95, 178
MspR9I CCNGG 1 cut(s) 178
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 572, 625
NciI CCSGG 1 cut(s) 178
NdeII GATC 2 cut(s) 422, 544
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 3 cut(s) 50, 141, 400
NlaIV GGNNCC 1 cut(s) 470
PfeI GAWTC 3 cut(s) 29, 704, 747
PkrI GCNGC 2 cut(s) 388, 561
PleI GAGTC 2 cut(s) 44, 223
PpsI GAGTC 2 cut(s) 44, 223
PspFI CCCAGC 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 2 cut(s) 175, 247
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 2 cut(s) 244, 619
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 101, 690
SatI GCNGC 2 cut(s) 387, 560
Sau3AI GATC 2 cut(s) 422, 544
Sau96I GGNCC 2 cut(s) 175, 247
SchI GAGTC 2 cut(s) 45, 224
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 4 cut(s) 173, 373, 470, 632
SinI GGWCC 1 cut(s) 247
Sse9I AATT 4 cut(s) 237, 354, 430, 604
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 455
SspMI CTAG 2 cut(s) 465, 563
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 129, 645, 697
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 32
TasI AATT 4 cut(s) 237, 354, 430, 604
TfiI GAWTC 3 cut(s) 29, 704, 747
Tru1I TTAA 2 cut(s) 101, 690
Tru9I TTAA 2 cut(s) 101, 690
TscAI CASTG 2 cut(s) 12, 700
TseI GCWGC 2 cut(s) 386, 559
TspDTI ATGAA 2 cut(s) 468, 696
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 2 cut(s) 12, 700
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 237, 604
XspI CTAG 2 cut(s) 465, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.