Rorug05G0228900

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Forward (+)
23810417 .. 23811905
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0228900.1

Sequence Viewer

Length: 759 bp
ATGGCTCCGAAAACGGCAGCAAAATCCGGCTCCGGGACCCAGAACCCGAAGCCGAACTCGCTCGAGATCCGTTATCGGGGCGTCAGGAAGAGGCCTTGGGGTCGCTACGCTGCCGAGATCAGGGATCCTGGCAAGAAGACGAGGGTCTGGCTCGGCACGTTCGATACGGCTGAGGAGGCGGCGCGTGCGTACGACAAGGCGGCGCGGGAGTACCGTGGAGCTAAGGCTAAGACCAACTTCCCAACGCCGGCCGAGCGTCACGCGAGCAGCAACAACCGCGGCAACAATAACAGCGGCGGCAGACAGAACCATCATTCCCCGCCCGCGGCTCAGGCGCGCAGCCCCAGCCAGACCAGCACCGTGGACTCCTCGTCCCCGCCGGCGCAGGCGCCTCCGGCCCTGGACCTCACCCTCGCAGCGCCCCGTTTCGCGGCTGCGGCGGCCAACGCGGGCTACTTCACCGCCGCGAGTGCCTACCACGCGCTCCCCCTCGGGCGTCCCATCTTTTTCTTCGACGCGTTCGCCAGGACCGACAACGTGGTGACGGCGACGACGACGGGTCTCCATCGCCCCCTCGCCGCCCGCGAAATGGGCAAACTTGACAAAAGCGTCAAGGCAGCCGCCTCTCCGTCCGGGGGTTCCCACTCCGGCCTCAGCGATTCGGACTCCTCCACCGTCGTGGATTTCGCTCACTCCCCCGCCAAGAAAGGACCGCTCGATCTCGACCTCAACCTCCCCCCTCCACCGGAGAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

252

Amino Acids

26.57

Weight (kDa)

10.1

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 24 - 73 2e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 388
AccBSI CCGCTC 1 cut(s) 715
AclWI GGATC 3 cut(s) 61, 119, 132
AcoI YGGCCR 2 cut(s) 249, 441
AcyI GRCGYC 3 cut(s) 81, 389, 496
AfaI GTAC 2 cut(s) 191, 212
AfiI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 589, 635, 745
AflIII ACRYGT 1 cut(s) 516
AhdI GACNNNNNGTC 2 cut(s) 370, 558
AjnI CCWGG 3 cut(s) 127, 399, 524
AleI CACNNNNGTG 1 cut(s) 677
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 3 cut(s) 61, 119, 132
Ama87I CYCGRG 2 cut(s) 62, 491
AoxI GGCC 5 cut(s) 92, 249, 396, 441, 649
ApeKI GCWGC 7 cut(s) 17, 110, 267, 339, 416, 434, 617
AspLEI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 484
AspS9I GGNCC 5 cut(s) 36, 397, 403, 528, 710
AsuC2I CCSGG 2 cut(s) 34, 634
AsuHPI GGTGA 3 cut(s) 400, 451, 553
AvaI CYCGRG 2 cut(s) 62, 491
AvaII GGWCC 4 cut(s) 36, 403, 528, 710
BamHI GGATCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 143
BbvCI CCTCAGC 2 cut(s) 171, 653
BbvI GCAGC 7 cut(s) 29, 97, 279, 351, 421, 428, 629
BccI CCATC 3 cut(s) 318, 509, 573
BceAI ACGGC 3 cut(s) 30, 183, 561
BciT130I CCWGG 3 cut(s) 129, 401, 526
BcnI CCSGG 2 cut(s) 34, 634
BcoDI GTCTC 1 cut(s) 566
BfoI RGCGCY 2 cut(s) 392, 422
Bme1390I CCNGG 5 cut(s) 34, 129, 401, 526, 634
Bme18I GGWCC 4 cut(s) 36, 403, 528, 710
BmeRI GACNNNNNGTC 2 cut(s) 370, 558
BmeT110I CYCGRG 2 cut(s) 62, 491
BmgT120I GGNCC 5 cut(s) 36, 397, 403, 528, 710
BmiI GGNNCC 7 cut(s) 6, 31, 37, 38, 126, 390, 640
BmrFI CCNGG 5 cut(s) 34, 129, 401, 526, 634
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 143
Bpu10I CCTNAGC 4 cut(s) 171, 222, 330, 653
BpuMI CCSGG 2 cut(s) 34, 634
BsaHI GRCGYC 3 cut(s) 81, 389, 496
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 8 cut(s) 95, 214, 277, 324, 360, 399, 490, 633
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 589, 635, 745
Bse118I RCCGGY 2 cut(s) 247, 379
BseBI CCWGG 3 cut(s) 129, 401, 526
BseDI CCNNGG 8 cut(s) 95, 214, 277, 324, 360, 399, 490, 633
BseLI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 589, 635, 745
BseMII CTCAG 3 cut(s) 162, 344, 667
BsePI GCGCGC 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 188, 358, 658
BseX3I CGGCCG 1 cut(s) 249
BseXI GCAGC 7 cut(s) 29, 97, 279, 351, 421, 428, 629
BseYI CCCAGC 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 94, 251, 398, 443, 651
BshNI GGYRCC 1 cut(s) 388
BsiEI CGRYCG 1 cut(s) 252
BsiHKCI CYCGRG 2 cut(s) 62, 491
BsiSI CCGG 8 cut(s) 27, 33, 248, 380, 395, 633, 648, 746
BsiWI CGTACG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 49, 358, 483
BslI CCNNNNNNNGG 9 cut(s) 33, 76, 120, 247, 325, 430, 589, 635, 745
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 3 cut(s) 49, 358, 483
BsnI GGCC 5 cut(s) 94, 251, 398, 443, 651
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 2 cut(s) 62, 491
Bsp143I GATC 4 cut(s) 66, 117, 124, 718
BspANI GGCC 5 cut(s) 94, 251, 398, 443, 651
BspCNI CTCAG 3 cut(s) 163, 343, 666
BspLI GGNNCC 7 cut(s) 6, 31, 37, 38, 126, 390, 640
BspPI GGATC 3 cut(s) 61, 119, 132
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 715
BsrFI RCCGGY 2 cut(s) 247, 379
BssAI RCCGGY 2 cut(s) 247, 379
BssECI CCNNGG 8 cut(s) 95, 214, 277, 324, 360, 399, 490, 633
BssHII GCGCGC 1 cut(s) 335
BssMI GATC 4 cut(s) 66, 117, 124, 718
BssNI GRCGYC 3 cut(s) 81, 389, 496
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 3 cut(s) 129, 401, 526
Bst4CI ACNGT 3 cut(s) 215, 361, 676
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 3 cut(s) 81, 389, 496
BstC8I GCNNGC 9 cut(s) 186, 249, 265, 324, 337, 381, 387, 451, 583
BstDEI CTNAG 5 cut(s) 171, 222, 228, 330, 653
BstDSI CCRYGG 4 cut(s) 214, 277, 324, 360
BstH2I RGCGCY 2 cut(s) 392, 422
BstHHI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 484
BstKTI GATC 4 cut(s) 69, 120, 127, 721
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 4 cut(s) 66, 117, 124, 718
BstMCI CGRYCG 1 cut(s) 252
BstNI CCWGG 3 cut(s) 129, 401, 526
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 32, 127, 399, 524, 632
BstV1I GCAGC 7 cut(s) 29, 97, 279, 351, 421, 428, 629
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 66, 124
BstXI CCANNNNNNTGG 2 cut(s) 361, 679
BstYI RGATCY 2 cut(s) 66, 124
BstZI CGGCCG 1 cut(s) 249
BsuRI GGCC 5 cut(s) 94, 251, 398, 443, 651
BtgI CCRYGG 4 cut(s) 214, 277, 324, 360
BtgZI GCGATG 1 cut(s) 551
Cac8I GCNNGC 9 cut(s) 186, 249, 265, 324, 337, 381, 387, 451, 583
CfoI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 484
Cfr10I RCCGGY 2 cut(s) 247, 379
Cfr13I GGNCC 5 cut(s) 36, 397, 403, 528, 710
Cfr42I CCGCGG 2 cut(s) 280, 327
CseI GACGC 5 cut(s) 70, 245, 485, 524, 598
Csp6I GTAC 2 cut(s) 190, 211
CviQI GTAC 2 cut(s) 190, 211
DdeI CTNAG 5 cut(s) 171, 222, 228, 330, 653
DinI GGCGCC 1 cut(s) 390
DpnI GATC 4 cut(s) 68, 119, 126, 720
DpnII GATC 4 cut(s) 66, 117, 124, 718
DrdI GACNNNNNNGTC 1 cut(s) 608
DriI GACNNNNNGTC 2 cut(s) 370, 558
DseDI GACNNNNNNGTC 1 cut(s) 608
EaeI YGGCCR 2 cut(s) 249, 441
EagI CGGCCG 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 83
Eam1105I GACNNNNNGTC 2 cut(s) 370, 558
EarI CTCTTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 4 cut(s) 36, 403, 528, 710
Eco52I CGGCCG 1 cut(s) 249
Eco88I CYCGRG 2 cut(s) 62, 491
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 3 cut(s) 127, 399, 524
EcoT14I CCWWGG 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 3 cut(s) 49, 358, 483
FauI CCCGC 7 cut(s) 198, 327, 331, 384, 442, 590, 706
GlaI GCGC 8 cut(s) 183, 204, 336, 338, 384, 390, 420, 483
GsaI CCCAGC 1 cut(s) 348
HaeII RGCGCY 2 cut(s) 392, 422
HaeIII GGCC 5 cut(s) 94, 251, 398, 443, 651
HapII CCGG 8 cut(s) 27, 33, 248, 380, 395, 633, 648, 746
HgaI GACGC 5 cut(s) 70, 245, 485, 524, 598
HhaI GCGC 8 cut(s) 184, 205, 337, 339, 385, 391, 421, 484
Hin1I GRCGYC 3 cut(s) 81, 389, 496
Hin6I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 482
HinP1I GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 482
HinfI GANTC 3 cut(s) 365, 659, 665
HpaII CCGG 8 cut(s) 27, 33, 248, 380, 395, 633, 648, 746
HphI GGTGA 3 cut(s) 400, 451, 553
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 9, 664
Hpy188III TCNNGA 3 cut(s) 64, 85, 722
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 5 cut(s) 518, 553, 556, 559, 680
HpyCH4III ACNGT 3 cut(s) 215, 361, 676
HpyCH4IV ACGT 2 cut(s) 158, 537
HpyF3I CTNAG 5 cut(s) 171, 222, 228, 330, 653
HpySE526I ACGT 2 cut(s) 158, 537
Hsp92I GRCGYC 3 cut(s) 81, 389, 496
HspAI GCGC 8 cut(s) 182, 203, 335, 337, 383, 389, 419, 482
KasI GGCGCC 1 cut(s) 388
KflI GGGWCCC 1 cut(s) 36
KroI GCCGGC 2 cut(s) 247, 379
KroNI GCCGGC 2 cut(s) 249, 381
KspI CCGCGG 2 cut(s) 280, 327
Kzo9I GATC 4 cut(s) 66, 117, 124, 718
LmnI GCTCC 4 cut(s) 10, 35, 218, 489
Lsp1109I GCAGC 7 cut(s) 29, 97, 279, 351, 421, 428, 629
MaeII ACGT 2 cut(s) 158, 537
MaeIII GTNAC 2 cut(s) 257, 541
MalI GATC 4 cut(s) 68, 119, 126, 720
MbiI CCGCTC 1 cut(s) 715
MboI GATC 4 cut(s) 66, 117, 124, 718
MboII GAAGA 3 cut(s) 100, 148, 502
MflI RGATCY 2 cut(s) 66, 124
MluI ACGCGT 1 cut(s) 516
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 2 cut(s) 359, 659
MreI CGCCGGCG 1 cut(s) 379
MroNI GCCGGC 2 cut(s) 247, 379
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 3 cut(s) 279, 294, 326
MspI CCGG 8 cut(s) 27, 33, 248, 380, 395, 633, 648, 746
MspR9I CCNGG 5 cut(s) 34, 129, 401, 526, 634
MvaI CCWGG 3 cut(s) 129, 401, 526
NaeI GCCGGC 2 cut(s) 249, 381
NarI GGCGCC 1 cut(s) 389
NciI CCSGG 2 cut(s) 34, 634
NdeII GATC 4 cut(s) 66, 117, 124, 718
NgoMIV GCCGGC 2 cut(s) 247, 379
NlaIV GGNNCC 7 cut(s) 6, 31, 37, 38, 126, 390, 640
NmeAIII GCCGAG 3 cut(s) 132, 139, 277
NmuCI GTSAC 2 cut(s) 257, 541
OliI CACNNNNGTG 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 62
PauI GCGCGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 4 cut(s) 159, 528, 551, 582
PdiI GCCGGC 2 cut(s) 249, 381
PfeI GAWTC 1 cut(s) 659
Pfl23II CGTACG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 32
PleI GAGTC 2 cut(s) 359, 659
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 2 cut(s) 359, 659
PpuMI RGGWCCY 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 3 cut(s) 127, 399, 524
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 3 cut(s) 127, 399, 524
PspLI CGTACG 1 cut(s) 189
PspN4I GGNNCC 7 cut(s) 6, 31, 37, 38, 126, 390, 640
PspPI GGNCC 5 cut(s) 36, 397, 403, 528, 710
PspPPI RGGWCCY 1 cut(s) 36
PsuI RGATCY 2 cut(s) 66, 124
PteI GCGCGC 1 cut(s) 335
RsaI GTAC 2 cut(s) 191, 212
RsaNI GTAC 2 cut(s) 190, 211
RseI CAYNNNNRTG 1 cut(s) 677
SacII CCGCGG 2 cut(s) 280, 327
Sau3AI GATC 4 cut(s) 66, 117, 124, 718
Sau96I GGNCC 5 cut(s) 36, 397, 403, 528, 710
SchI GAGTC 2 cut(s) 359, 659
ScrFI CCNGG 5 cut(s) 34, 129, 401, 526, 634
SetI ASST 6 cut(s) 161, 223, 408, 540, 729, 735
SfoI GGCGCC 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 62
Sfr303I CCGCGG 2 cut(s) 280, 327
SgrAI CRCCGGYG 1 cut(s) 379
SgrBI CCGCGG 2 cut(s) 280, 327
SinI GGWCC 4 cut(s) 36, 403, 528, 710
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 94
SspDI GGCGCC 1 cut(s) 388
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 32, 127, 399, 524, 632
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 215, 361, 676
TaiI ACGT 2 cut(s) 161, 540
TaqI TCGA 5 cut(s) 63, 162, 513, 717, 723
TaqII GACCGA 1 cut(s) 545
TfiI GAWTC 1 cut(s) 659
TseFI GTSAC 2 cut(s) 257, 541
TseI GCWGC 7 cut(s) 17, 110, 267, 339, 416, 434, 617
Tsp45I GTSAC 2 cut(s) 257, 541
TspGWI ACGGA 2 cut(s) 59, 618
VpaK11BI GGWCC 4 cut(s) 36, 403, 528, 710
XhoI CTCGAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.