Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

40823583 .. 40824566

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATGTGGAGGTGAATAAAATTGCATCAATTCCATTGAGTCTTCGTCAGACGGAGGATAGGATAGTTTGGCACTTTGATACAAAAGGGGTGTATAACGTTAGGAGTGGGTACCATGTATTTGTTAATTCTTTGAAGATGGAGGAAACGGCCTCAACGTCGTCTGGTATGACTGGGGGAAGTCTTCGTGCTTATTGGAGTAAGCTTTGGAAATCAACTGTGCCTCCAAGGGTCAAGGTGTTTGTTTGGCGTTTACTGCATGGTGCACTACCTACCAGGTCAGCTTTACATTCACGTAAAATCCCCATGCATGACGTTAAGTGTGTGTTTTGTTGCAAGGAAGTGGAAATTGGGAAACATGTGTTTAAGGATTGTGAGGCCCTCCAGTGCTTTTGGGCTTTTGGTCCTTTACAATTAAAGGCAAGGAATCATGCAGCTAGTGGCTTGAAAGAATGGTTGTTTGATGTACTAGACGTACTAGGTGGTGAACATGTGGATTACTTTTTTATGGCACTTTGGTTGGTGTGGTGTGAGAGAAACAACCTGGTGTGGAAGGGAGGGAATTTTCAACCTATGCATATGATTGAATGGTGCAAGCAGAAGTTGGAGGATTTCCAAAAATACCATCCCAAGGCAACTAGAAAGAAGAAGAGGCCCGTGGCTAAATGGGAATGTCCTCCGAGTGGTAGACTGAAAATAAATATTGATGGTGCTTTTAAGGTGGACAACGGTGTTGGAGGCATTGGAGTAGTGGTCAGAGATACGATGGGCACGGGTATTGCGGCTATTGCAAGACCTTTTCTGCATGCACACTCGGCTATCAATATGGAAGCGGAGGCGTGCAGAGCGGGTCTTCTTCTTGGTGTTTGGCTCCAATTTTGTTGCAGCTGGTCAACAGTCTCTTTTCTTGCGCGGGCGTGCCAGCACCGTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCTGACTTCTGTTGAGCGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

327

Amino Acids

37.09

Weight (kDa)

9.43

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	64 - 132	1.1e-16	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	688
AccII	CGCG	1 cut(s)	913
AciI	CCGC	5 cut(s)	782, 833, 848, 913, 937
AclI	AACGTT	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	3 cut(s)	113, 468, 477
AfiI	CCNNNNNNNGG	2 cut(s)	631, 683
AflIII	ACRYGT	2 cut(s)	358, 490
AgsI	TTSAA	4 cut(s)	136, 448, 569, 587
AjnI	CCWGG	2 cut(s)	275, 543
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	205, 284, 437, 888
AluI	AGCT	4 cut(s)	205, 284, 437, 888
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	904
Alw44I	GTGCAC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	150, 378, 653
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	434, 885
ApoI	RAATTY	1 cut(s)	562
Asp718I	GGTACC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	3 cut(s)	379, 404, 654
AsuHPI	GGTGA	2 cut(s)	25, 497
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	2 cut(s)	268, 773
BanI	GGYRCC	1 cut(s)	111
BbsI	GAAGAC	3 cut(s)	35, 176, 845
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	446, 897
BccI	CCATC	4 cut(s)	133, 633, 701, 760
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	2 cut(s)	277, 545
BcoDI	GTCTC	1 cut(s)	904
BfaI	CTAG	4 cut(s)	438, 470, 479, 639
BisI	GCNGC	3 cut(s)	435, 783, 886
BlsI	GCNGC	3 cut(s)	436, 784, 887
Bme1390I	CCNGG	2 cut(s)	277, 545
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	379, 404, 654
BmiI	GGNNCC	2 cut(s)	113, 872
BmrFI	CCNGG	2 cut(s)	277, 545
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	3 cut(s)	35, 176, 845
BpmI	CTGGAG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	227, 630, 657
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 683
Bse1I	ACTGG	2 cut(s)	178, 385
BseBI	CCWGG	2 cut(s)	277, 545
BseDI	CCNNGG	3 cut(s)	227, 630, 657
BseGI	GGATG	2 cut(s)	10, 625
BseLI	CCNNNNNNNGG	2 cut(s)	631, 683
BseNI	ACTGG	2 cut(s)	178, 385
BseSI	GKGCMC	2 cut(s)	268, 773
BseXI	GCAGC	2 cut(s)	446, 897
BsgI	GTGCAG	1 cut(s)	862
Bsh1236I	CGCG	1 cut(s)	913
Bsh1285I	CGRYCG	1 cut(s)	941
BshFI	GGCC	3 cut(s)	152, 380, 655
BshNI	GGYRCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	937
BslI	CCNNNNNNNGG	2 cut(s)	631, 683
BsmAI	GTCTC	1 cut(s)	904
BsmFI	GGGAC	1 cut(s)	937
BsnI	GGCC	3 cut(s)	152, 380, 655
Bsp1286I	GDGCHC	2 cut(s)	268, 773
BspACI	CCGC	5 cut(s)	782, 833, 848, 913, 937
BspANI	GGCC	3 cut(s)	152, 380, 655
BspFNI	CGCG	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	113, 872
BspT107I	GGYRCC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	848
BsrI	ACTGG	2 cut(s)	178, 385
BssECI	CCNNGG	3 cut(s)	227, 630, 657
BssT1I	CCWWGG	2 cut(s)	227, 630
Bst2UI	CCWGG	2 cut(s)	277, 545
Bst4CI	ACNGT	4 cut(s)	220, 731, 898, 929
Bst6I	CTCTTC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	6 cut(s)	596, 807, 841, 915, 919, 923
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	10, 625
BstFNI	CGCG	1 cut(s)	913
BstHHI	GCGC	1 cut(s)	913
BstMAI	GTCTC	1 cut(s)	904
BstMCI	CGRYCG	1 cut(s)	941
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 788, 815, 845
BstNI	CCWGG	2 cut(s)	277, 545
BstNSI	RCATGY	3 cut(s)	362, 494, 809
BstSCI	CCNGG	2 cut(s)	275, 543
BstSLI	GKGCMC	2 cut(s)	268, 773
BstUI	CGCG	1 cut(s)	913
BstV1I	GCAGC	2 cut(s)	446, 897
BstV2I	GAAGAC	3 cut(s)	35, 176, 845
BsuRI	GGCC	3 cut(s)	152, 380, 655
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	2 cut(s)	10, 625
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	6 cut(s)	596, 807, 841, 915, 919, 923
CfoI	GCGC	1 cut(s)	913
Cfr13I	GGNCC	3 cut(s)	379, 404, 654
CsiI	ACCWGGT	2 cut(s)	275, 543
Csp6I	GTAC	3 cut(s)	112, 467, 476
CviAII	CATG	8 cut(s)	116, 260, 307, 311, 359, 431, 491, 806
CviQI	GTAC	3 cut(s)	112, 467, 476
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco130I	CCWWGG	2 cut(s)	227, 630
Eco47I	GGWCC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	275, 543
EcoT14I	CCWWGG	2 cut(s)	227, 630
EcoT22I	ATGCAT	2 cut(s)	312, 579
ErhI	CCWWGG	2 cut(s)	227, 630
FaeI	CATG	8 cut(s)	119, 263, 310, 314, 362, 434, 494, 809
FaqI	GGGAC	1 cut(s)	937
FatI	CATG	8 cut(s)	115, 259, 306, 310, 358, 430, 490, 805
FauI	CCCGC	2 cut(s)	841, 906
FauNDI	CATATG	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	3 cut(s)	435, 783, 886
FokI	GGATG	2 cut(s)	17, 612
Fsp4HI	GCNGC	3 cut(s)	435, 783, 886
FspBI	CTAG	4 cut(s)	438, 470, 479, 639
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	3 cut(s)	435, 783, 886
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	152, 380, 655
HhaI	GCGC	1 cut(s)	913
Hin1II	CATG	8 cut(s)	119, 263, 310, 314, 362, 434, 494, 809
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	40, 427
HphI	GGTGA	2 cut(s)	25, 497
Hpy166II	GTNNAC	6 cut(s)	254, 266, 488, 689, 724, 894
Hpy188I	TCNGA	3 cut(s)	51, 681, 758
Hpy8I	GTNNAC	6 cut(s)	254, 266, 488, 689, 724, 894
Hpy99I	CGWCG	3 cut(s)	163, 933, 946
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	4 cut(s)	220, 731, 898, 929
HpyCH4IV	ACGT	5 cut(s)	99, 158, 295, 315, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 788, 815, 845
HpySE526I	ACGT	5 cut(s)	99, 158, 295, 315, 474
Hsp92II	CATG	8 cut(s)	119, 263, 310, 314, 362, 434, 494, 809
HspAI	GCGC	1 cut(s)	911
KpnI	GGTACC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	2 cut(s)	446, 897
LweI	GCATC	1 cut(s)	35
MabI	ACCWGGT	2 cut(s)	275, 543
MaeI	CTAG	4 cut(s)	438, 470, 479, 639
MaeII	ACGT	5 cut(s)	99, 158, 295, 315, 474
MbiI	CCGCTC	1 cut(s)	848
MboII	GAAGA	7 cut(s)	35, 148, 176, 658, 661, 845, 848
MhlI	GDGCHC	2 cut(s)	268, 773
MluCI	AATT	7 cut(s)	21, 30, 127, 348, 413, 562, 875
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	585, 715
Mph1103I	ATGCAT	2 cut(s)	312, 579
MseI	TTAA	5 cut(s)	126, 318, 366, 416, 717
MspA1I	CMGCKG	1 cut(s)	888
MspR9I	CCNGG	2 cut(s)	277, 545
MvaI	CCWGG	2 cut(s)	277, 545
MvnI	CGCG	1 cut(s)	913
MwoI	GCNNNNNNNGC	4 cut(s)	256, 788, 815, 845
NdeI	CATATG	1 cut(s)	579
NlaIII	CATG	8 cut(s)	119, 263, 310, 314, 362, 434, 494, 809
NlaIV	GGNNCC	2 cut(s)	113, 872
NmeAIII	GCCGAG	1 cut(s)	794
NsiI	ATGCAT	2 cut(s)	312, 579
NspI	RCATGY	3 cut(s)	362, 494, 809
PaeI	GCATGC	1 cut(s)	809
PciI	ACATGT	2 cut(s)	358, 490
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	436, 784, 887
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Ppu21I	YACGTR	1 cut(s)	296
PscI	ACATGT	2 cut(s)	358, 490
Psp1406I	AACGTT	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	275, 543
PspGI	CCWGG	2 cut(s)	275, 543
PspN4I	GGNNCC	2 cut(s)	113, 872
PspPI	GGNCC	3 cut(s)	379, 404, 654
PvuII	CAGCTG	1 cut(s)	888
RsaI	GTAC	3 cut(s)	113, 468, 477
RsaNI	GTAC	3 cut(s)	112, 467, 476
SaqAI	TTAA	5 cut(s)	126, 318, 366, 416, 717
SatI	GCNGC	3 cut(s)	435, 783, 886
Sau96I	GGNCC	3 cut(s)	379, 404, 654
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	277, 545
SduI	GDGCHC	2 cut(s)	268, 773
SexAI	ACCWGGT	2 cut(s)	275, 543
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	404
SphI	GCATGC	1 cut(s)	809
Sse9I	AATT	7 cut(s)	21, 30, 127, 348, 413, 562, 875
SsiI	CCGC	5 cut(s)	782, 833, 848, 913, 937
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	438, 470, 479, 639
StyD4I	CCNGG	2 cut(s)	275, 543
StyI	CCWWGG	2 cut(s)	227, 630
TaaI	ACNGT	4 cut(s)	220, 731, 898, 929
TaiI	ACGT	5 cut(s)	102, 161, 298, 318, 477
TasI	AATT	7 cut(s)	21, 30, 127, 348, 413, 562, 875
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	5 cut(s)	126, 318, 366, 416, 717
Tru9I	TTAA	5 cut(s)	126, 318, 366, 416, 717
TscAI	CASTG	1 cut(s)	392
TseI	GCWGC	2 cut(s)	434, 885
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	3 cut(s)	362, 494, 809
XmiI	GTMKAC	1 cut(s)	688
XspI	CTAG	4 cut(s)	438, 470, 479, 639
Zsp2I	ATGCAT	2 cut(s)	312, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.