Rorug05G0361300
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Reverse (-)
47694764 .. 47696858
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0361300.1

Sequence Viewer

Length: 735 bp
ATGGAGGAGATGAAGTGCCCTAGATCCACTTTCTCTCTCCTCCTCGCCTTCAAACTATGCACCGCCACCACCTCCGCACAAAGCTCCAAAAAAAAACCACCTCCAGTCCCCAAAGACACCCTAGACTTCTCCCTAGCTCACAGAAAGCATCTACATACCCTCACAGGACTGGTCGCCATCCTCATTTCATCACTGGAGTCTCCGATCTCTGTTAGTGAGATATTGGATTCAGAGTTATTAGGTGAAGGGTTGATACCTTCTCAGCAACATGTGCATGACATATTGTTGGTGGAGAGTCCTGAAATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAGCTTCATGATTTACGCAGTAATAAGGCAGAAGTGAGTGATGGGATTCGTCTTGTTCTGACCGGGTTTGAGGACGTTTTGGGTGTTAAGCCGCAACAATATGCGTTTCATTGTGATGCTATAGCAGATGAAGTGACACTGCTGTTGGAACCCTTCAAGATCTTTGAATTGGATTTTTCGAAACGGCCACAGAGTCGTGGAGAAACTGAGCTATCTATAAAGGCGACTAATGAGGGTCGAGTTCATGCTGTAATTTCATGGTGGATACTTCAACTTGATCGAGAATGGACAATCTTTTATTCCACTGCCCCTAGGTGGATAAATTTGCCAGCCAACATTAACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

244

Amino Acids

27.5

Weight (kDa)

5.76

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRMT_C PF22528 164 - 226 9.2e-06 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 63, 75, 452
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 1 cut(s) 682
AfiI CCNNNNNNNGG 1 cut(s) 675
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 52, 517, 527, 632
AluBI AGCT 4 cut(s) 84, 137, 364, 571
AluI AGCT 4 cut(s) 84, 137, 364, 571
Alw21I GWGCWC 2 cut(s) 350, 725
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 545
ApoI RAATTY 1 cut(s) 682
AspA2I CCTAGG 1 cut(s) 671
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 539
AvrII CCTAGG 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
Bbv12I GWGCWC 2 cut(s) 350, 725
BccI CCATC 2 cut(s) 185, 395
BceAI ACGGC 1 cut(s) 560
BciVI GTATCC 1 cut(s) 618
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 4 cut(s) 21, 122, 134, 672
BfmI CTRYAG 1 cut(s) 480
BfuI GTATCC 1 cut(s) 618
BglII AGATCT 1 cut(s) 519
BisI GCNGC 1 cut(s) 452
BlnI CCTAGG 1 cut(s) 671
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 2 cut(s) 157, 466
BpmI CTGGAG 2 cut(s) 87, 215
Bpu14I TTCGAA 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 671
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse1I ACTGG 3 cut(s) 104, 174, 198
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMII CTCAG 2 cut(s) 275, 558
BseNI ACTGG 3 cut(s) 104, 174, 198
BseRI GAGGAG 3 cut(s) 20, 29, 32
BseSI GKGCMC 1 cut(s) 20
BshFI GGCC 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 350, 725
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 547
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 3 cut(s) 20, 350, 725
Bsp143I GATC 4 cut(s) 23, 204, 519, 637
BspACI CCGC 3 cut(s) 63, 75, 452
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 2 cut(s) 274, 559
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 510
BspPI GGATC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 539
BsrI ACTGG 3 cut(s) 104, 174, 198
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 23, 204, 519, 637
BssT1I CCWWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 3 cut(s) 261, 567, 724
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 4 cut(s) 26, 207, 522, 640
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 4 cut(s) 23, 204, 519, 637
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 23, 519
BstYI RGATCY 2 cut(s) 23, 519
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 1 cut(s) 547
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 2 cut(s) 497, 663
BtsIMutI CAGTG 3 cut(s) 191, 497, 663
Cac8I GCNNGC 1 cut(s) 690
CciI TCATGA 1 cut(s) 367
CviAII CATG 5 cut(s) 269, 275, 368, 605, 618
CviJI RGCY 7 cut(s) 84, 137, 364, 451, 547, 571, 692
CviKI_1 RGCY 7 cut(s) 84, 137, 364, 451, 547, 571, 692
DdeI CTNAG 3 cut(s) 261, 567, 724
DpnI GATC 4 cut(s) 25, 206, 521, 639
DpnII GATC 4 cut(s) 23, 204, 519, 637
EaeI YGGCCR 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 671
FaeI CATG 5 cut(s) 272, 278, 371, 608, 621
FaqI GGGAC 1 cut(s) 92
FatI CATG 5 cut(s) 268, 274, 367, 604, 617
Fnu4HI GCNGC 1 cut(s) 452
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 4 cut(s) 21, 122, 134, 672
GluI GCNGC 1 cut(s) 452
GsuI CTGGAG 2 cut(s) 87, 215
HaeIII GGCC 1 cut(s) 547
HapII CCGG 1 cut(s) 423
Hin1II CATG 5 cut(s) 272, 278, 371, 608, 621
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 5 cut(s) 197, 227, 295, 406, 553
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 204, 232, 420
Hpy188III TCNNGA 4 cut(s) 299, 368, 517, 641
HpyAV CCTTC 4 cut(s) 58, 239, 267, 523
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 60, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 3 cut(s) 261, 567, 724
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 5 cut(s) 272, 278, 371, 608, 621
Kzo9I GATC 4 cut(s) 23, 204, 519, 637
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 7 cut(s) 117, 150, 155, 179, 312, 436, 702
LweI GCATC 2 cut(s) 157, 466
MaeI CTAG 4 cut(s) 21, 122, 134, 672
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 493
MalI GATC 4 cut(s) 25, 206, 521, 639
MboI GATC 4 cut(s) 23, 204, 519, 637
MflI RGATCY 2 cut(s) 23, 519
MhlI GDGCHC 3 cut(s) 20, 350, 725
MluCI AATT 3 cut(s) 527, 612, 682
MlyI GAGTC 3 cut(s) 206, 304, 562
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 8 cut(s) 50, 53, 82, 111, 170, 191, 424, 586
MseI TTAA 3 cut(s) 447, 699, 714
MslI CAYNNNNRTG 3 cut(s) 273, 355, 474
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 424
NdeII GATC 4 cut(s) 23, 204, 519, 637
NlaIII CATG 5 cut(s) 272, 278, 371, 608, 621
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 1 cut(s) 272
NspV TTCGAA 1 cut(s) 539
PagI TCATGA 1 cut(s) 367
PciI ACATGT 1 cut(s) 268
PfeI GAWTC 2 cut(s) 227, 406
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 3 cut(s) 205, 303, 561
PpsI GAGTC 3 cut(s) 205, 303, 561
PscI ACATGT 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 510
PsuI RGATCY 2 cut(s) 23, 519
RseI CAYNNNNRTG 3 cut(s) 273, 355, 474
SaqAI TTAA 3 cut(s) 447, 699, 714
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 4 cut(s) 23, 204, 519, 637
SchI GAGTC 3 cut(s) 206, 304, 562
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 3 cut(s) 20, 350, 725
SfaNI GCATC 2 cut(s) 157, 466
SfcI CTRYAG 1 cut(s) 480
SfuI TTCGAA 1 cut(s) 539
SmiMI CAYNNNNRTG 3 cut(s) 273, 355, 474
Sse9I AATT 3 cut(s) 527, 612, 682
SsiI CCGC 3 cut(s) 63, 75, 452
SspMI CTAG 4 cut(s) 21, 122, 134, 672
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 671
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 438
TaqI TCGA 3 cut(s) 539, 598, 640
TasI AATT 3 cut(s) 527, 612, 682
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 2 cut(s) 227, 406
Tru1I TTAA 3 cut(s) 447, 699, 714
Tru9I TTAA 3 cut(s) 447, 699, 714
TscAI CASTG 3 cut(s) 198, 504, 670
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 7 cut(s) 26, 177, 356, 458, 504, 593, 606
TspRI CASTG 3 cut(s) 198, 504, 670
XapI RAATTY 1 cut(s) 682
XceI RCATGY 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 671
XspI CTAG 4 cut(s) 21, 122, 134, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.