Rorug05G0472900

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
N/A
Physical Location & Seq
Forward (+)
64972781 .. 64973076
296 bp
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UTR
Exon/CDS
Intron
Rorug05G0472900.1

Sequence Viewer

Length: 198 bp
ATGATGTTGGATTGTGAAAGAAGTGTATTCAATGAGTGGGCAAAGAACAAAAAGGATGCAAAAGGTTTGTATGATAAACCATTTGAACATTATTATGCCCTTGGAGAGAGATATACGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.97

Weight (kDa)

9.27

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 31, 86
BmsI GCATC 2 cut(s) 46, 177
BsaJI CCNNGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 61, 192
BseMI GCAATG 1 cut(s) 137
Bsp143I GATC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 192
BstF5I GGATG 2 cut(s) 61, 192
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 61, 192
Cac8I GCNNGC 1 cut(s) 192
CviAII CATG 1 cut(s) 195
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 198
FaiI YATR 4 cut(s) 72, 96, 114, 196
FatI CATG 1 cut(s) 194
FokI GGATG 1 cut(s) 68
Hin1II CATG 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 59, 130, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 198
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 1 cut(s) 131
LweI GCATC 2 cut(s) 46, 177
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 169, 178, 181, 193
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 93
Sau3AI GATC 1 cut(s) 123
SetI ASST 1 cut(s) 67
SfaNI GCATC 2 cut(s) 46, 177
SgeI CNNG 3 cut(s) 113, 139, 158
SmiMI CAYNNNNRTG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.