Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

72047151 .. 72049502

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0532200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATAGAAAGTCCTTCTCCGAGGTCTGCAAGCAATGGTGTAGACTGTAGAGTAGAAGGTCTAAGCCGATCATCACTTACGGTCTACCATAACTGGCCCGGTTTGCCCCTTGGTGCACTAACTAGATTCCCAAATGTAGTCGATTTGGAAGTAAAGTATGTTAGGACTGAGGCCGACCTTGAATTCATAGCCCAAACTTGTCCTAGACTCGAGAGCATTACGGTCCACTCCGATATCCGTATAGAGAGTGATGATATTGTTTTGGGGCCAAAAAGTCTAGTTGCTTTGGGGAATGGGTGTCCAAAATTGTCCAAAGTTAAGCTTGTGGGGAGGGAAGCAGTAGGGGATTCGGGAGTTGTGGCGCTTGTTCATTCAGCACGTAACTTGAAGGCTCTGGTTTTGGCATGTGATTTGTGGATCTCAGATGAAGCCTTGAGAGCCATTGGGTATGCATCTTCCATTAGCACGTTGAAGTTGCCAGGGTCTTGCATTAAGGATGTGGAATTAGGTGTTTTAGCAAATGGGACATCTTCCATTAGCACTTTGGAGTTGGTAAGGTGTCGCAAGATTACGGATGTGGGATTGGGTTTTTTGGCAAATGGGTCTATCTCGAAAACCCTCAAGAAATTGGTCCTTGATGGCTGCAACAAAATCACTGATACTGGAGTCCAGCTTTTGCGGAAAATGTGTAGCTTGGAGCACCTAGATTTGTCTAACTGTGGGAGTAGAATCACTAATGCTGGAGGTGTGGCAATCTCTGCAATTCAAACCCTCAGGGAATTGCTATTGGTTAATCTTCAGACCGTGTCAAACAGTACCATGGTTGCTCTTGCATGGAACTGCCCCAACTTGGAAATACTTGATTTACGGGGCTGTAAAGCTGTAACAGGAGCTGGCATTCGTGCATTTTCAGGTCATAAGTGTTTGAAACGCCTTGTATTGCTTAACTTACCCTTTCACAATTTTAATGAAGCTGATTTGGAAAGCATAGCCCTTGGATGCCCGTTGTTGGAGTCAGAATTTGTTCTGGTGGACAATGTGATTAAAGTGGTGCACGACAACACTCGAAGAGTCGTCAAGTTCATTAGTATATTCACACCGTCCTTCAGATTGAATATTGAGCAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

40.58

Weight (kDa)

8.2

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	140 - 240	1.1e-10	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	42, 84
AciI	CCGC	1 cut(s)	679
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	182, 1019
AcuI	CTGAAG	2 cut(s)	782, 1090
AfaI	GTAC	1 cut(s)	817
AfiI	CCNNNNNNNGG	2 cut(s)	850, 1009
AgsI	TTSAA	6 cut(s)	182, 388, 472, 767, 928, 1114
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	6 cut(s)	322, 673, 693, 881, 893, 974
AluI	AGCT	6 cut(s)	322, 673, 693, 881, 893, 974
Alw21I	GWGCWC	3 cut(s)	118, 702, 1056
Alw44I	GTGCAC	2 cut(s)	114, 1052
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	95, 171, 266
ApaLI	GTGCAC	2 cut(s)	114, 1052
ApeKI	GCWGC	1 cut(s)	642
ApoI	RAATTY	2 cut(s)	182, 1019
Asp700I	GAANNNNTTC	1 cut(s)	1023
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	4 cut(s)	96, 223, 266, 631
AsuC2I	CCSGG	1 cut(s)	99
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	223, 631
AxyI	CCTNAGG	1 cut(s)	773
BaeGI	GKGCMC	2 cut(s)	118, 1056
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
Bbv12I	GWGCWC	3 cut(s)	118, 702, 1056
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	99
BfaI	CTAG	4 cut(s)	123, 204, 278, 704
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	365
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
Bme1390I	CCNGG	2 cut(s)	99, 480
Bme18I	GGWCC	2 cut(s)	223, 631
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	4 cut(s)	96, 223, 266, 631
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	99, 480
BmsI	GCATC	2 cut(s)	461, 989
BpmI	CTGGAG	2 cut(s)	684, 762
BpuEI	CTTGAG	2 cut(s)	454, 605
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	5 cut(s)	20, 109, 479, 819, 994
Bsc4I	CCNNNNNNNGG	2 cut(s)	850, 1009
Bse1I	ACTGG	2 cut(s)	98, 667
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	5 cut(s)	20, 109, 479, 819, 994
BseGI	GGATG	3 cut(s)	502, 580, 1004
BseLI	CCNNNNNNNGG	2 cut(s)	850, 1009
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	159, 435, 787
BseNI	ACTGG	2 cut(s)	98, 667
BseSI	GKGCMC	2 cut(s)	118, 1056
BseXI	GCAGC	1 cut(s)	629
BshFI	GGCC	3 cut(s)	97, 173, 268
BsiHKAI	GWGCWC	3 cut(s)	118, 702, 1056
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	2 cut(s)	850, 1009
BsmFI	GGGAC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	3 cut(s)	97, 173, 268
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	118, 702, 1056
Bsp143I	GATC	2 cut(s)	68, 417
Bsp19I	CCATGG	1 cut(s)	819
BspACI	CCGC	1 cut(s)	679
BspANI	GGCC	3 cut(s)	97, 173, 268
BspCNI	CTCAG	3 cut(s)	160, 434, 786
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	98, 667
BssECI	CCNNGG	5 cut(s)	20, 109, 479, 819, 994
BssMI	GATC	2 cut(s)	68, 417
BssT1I	CCWWGG	3 cut(s)	109, 819, 994
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	7 cut(s)	47, 82, 223, 719, 805, 815, 1101
Bst6I	CTCTTC	1 cut(s)	1063
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	31, 895
BstDEI	CTNAG	4 cut(s)	62, 168, 421, 773
BstDSI	CCRYGG	1 cut(s)	819
BstF5I	GGATG	3 cut(s)	502, 580, 1004
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	71, 420
BstMBI	GATC	2 cut(s)	68, 417
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 437, 758
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	97, 478
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	2 cut(s)	118, 1056
BstV1I	GCAGC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	97, 173, 268
BtgI	CCRYGG	1 cut(s)	819
BtsCI	GGATG	3 cut(s)	502, 580, 1004
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	31, 895
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	4 cut(s)	96, 223, 266, 631
Csp6I	GTAC	1 cut(s)	816
CviAII	CATG	3 cut(s)	405, 820, 834
CviQI	GTAC	1 cut(s)	816
DdeI	CTNAG	4 cut(s)	62, 168, 421, 773
DpnI	GATC	2 cut(s)	70, 419
DpnII	GATC	2 cut(s)	68, 417
Eam1104I	CTCTTC	1 cut(s)	1063
EarI	CTCTTC	1 cut(s)	1063
Eco130I	CCWWGG	3 cut(s)	109, 819, 994
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	223, 631
Eco57I	CTGAAG	2 cut(s)	782, 1090
Eco81I	CCTNAGG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	3 cut(s)	109, 819, 994
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	3 cut(s)	109, 819, 994
FaeI	CATG	3 cut(s)	408, 823, 837
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	3 cut(s)	404, 819, 833
FblI	GTMKAC	2 cut(s)	42, 84
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	3 cut(s)	509, 587, 1011
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	4 cut(s)	123, 204, 278, 704
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	643
GsuI	CTGGAG	2 cut(s)	684, 762
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	97, 173, 268
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	408, 823, 837
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	7 cut(s)	126, 207, 347, 666, 729, 1013, 1071
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	6 cut(s)	43, 85, 116, 226, 1033, 1054
Hpy188I	TCNGA	6 cut(s)	21, 232, 424, 801, 1018, 1109
Hpy188III	TCNNGA	4 cut(s)	211, 351, 610, 622
Hpy8I	GTNNAC	6 cut(s)	43, 85, 116, 226, 1033, 1054
HpyAV	CCTTC	4 cut(s)	24, 50, 382, 1114
HpyCH4III	ACNGT	7 cut(s)	47, 82, 223, 719, 805, 815, 1101
HpyCH4IV	ACGT	2 cut(s)	379, 467
HpyCH4V	TGCA	9 cut(s)	29, 116, 452, 489, 645, 761, 833, 905, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 437, 758
HpyF3I	CTNAG	4 cut(s)	62, 168, 421, 773
HpySE526I	ACGT	2 cut(s)	379, 467
Hsp92II	CATG	3 cut(s)	408, 823, 837
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	68, 417
LmnI	GCTCC	2 cut(s)	697, 890
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	2 cut(s)	461, 989
MaeI	CTAG	4 cut(s)	123, 204, 278, 704
MaeII	ACGT	2 cut(s)	379, 467
MaeIII	GTNAC	2 cut(s)	380, 883
MalI	GATC	2 cut(s)	70, 419
MboI	GATC	2 cut(s)	68, 417
MboII	GAAGA	4 cut(s)	447, 522, 788, 1080
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	3 cut(s)	118, 702, 1056
MluCI	AATT	8 cut(s)	182, 305, 503, 626, 762, 779, 961, 1019
MlyI	GAGTC	4 cut(s)	201, 675, 1022, 1080
MmeI	TCCRAC	1 cut(s)	990
MnlI	CCTC	6 cut(s)	15, 163, 324, 629, 737, 782
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	1023
MseI	TTAA	6 cut(s)	318, 492, 792, 945, 966, 1044
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	99, 480
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	103, 437, 758
NciI	CCSGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	819
NdeII	GATC	2 cut(s)	68, 417
NlaIII	CATG	3 cut(s)	408, 823, 837
NlaIV	GGNNCC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	1 cut(s)	408
PaeR7I	CTCGAG	1 cut(s)	209
PctI	GAATGC	1 cut(s)	897
PdmI	GAANNNNTTC	1 cut(s)	1023
PfeI	GAWTC	3 cut(s)	126, 347, 729
PflFI	GACNNNGTC	1 cut(s)	805
PkrI	GCNGC	1 cut(s)	644
PleI	GAGTC	4 cut(s)	201, 674, 1021, 1079
PpsI	GAGTC	4 cut(s)	201, 674, 1021, 1079
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	4 cut(s)	96, 223, 266, 631
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	805
RsaI	GTAC	1 cut(s)	817
RsaNI	GTAC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	318, 492, 792, 945, 966, 1044
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	2 cut(s)	68, 417
Sau96I	GGNCC	4 cut(s)	96, 223, 266, 631
SchI	GAGTC	4 cut(s)	201, 675, 1022, 1080
ScrFI	CCNGG	2 cut(s)	99, 480
SduI	GDGCHC	3 cut(s)	118, 702, 1056
SfaNI	GCATC	2 cut(s)	461, 989
SfcI	CTRYAG	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	223, 631
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	3 cut(s)	209, 433, 620
SmoI	CTYRAG	3 cut(s)	209, 433, 620
Sse9I	AATT	8 cut(s)	182, 305, 503, 626, 762, 779, 961, 1019
SsiI	CCGC	1 cut(s)	679
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	4 cut(s)	123, 204, 278, 704
StyD4I	CCNGG	2 cut(s)	97, 478
StyI	CCWWGG	3 cut(s)	109, 819, 994
TaaI	ACNGT	7 cut(s)	47, 82, 223, 719, 805, 815, 1101
TaiI	ACGT	2 cut(s)	382, 470
TaqI	TCGA	4 cut(s)	141, 210, 611, 1066
TasI	AATT	8 cut(s)	182, 305, 503, 626, 762, 779, 961, 1019
TfiI	GAWTC	3 cut(s)	126, 347, 729
Tru1I	TTAA	6 cut(s)	318, 492, 792, 945, 966, 1044
Tru9I	TTAA	6 cut(s)	318, 492, 792, 945, 966, 1044
TscAI	CASTG	1 cut(s)	661
TseI	GCWGC	1 cut(s)	642
TspDTI	ATGAA	5 cut(s)	175, 359, 441, 984, 1072
TspGWI	ACGGA	2 cut(s)	227, 587
TspRI	CASTG	1 cut(s)	661
Tth111I	GACNNNGTC	1 cut(s)	805
VneI	GTGCAC	2 cut(s)	114, 1052
VpaK11BI	GGWCC	2 cut(s)	223, 631
XapI	RAATTY	2 cut(s)	182, 1019
XceI	RCATGY	1 cut(s)	408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	2 cut(s)	42, 84
XmnI	GAANNNNTTC	1 cut(s)	1023
XspI	CTAG	4 cut(s)	123, 204, 278, 704
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.