Rorug06G0037300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
N/A
Physical Location & Seq
Forward (+)
4693587 .. 4698135
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037300.1

Sequence Viewer

Length: 798 bp
ATGGGCCGGGCCGGGCCGGTTGACGACCCCTATCCCCAACCTAGGTTCGAACCCCGAAGCTGTCAAAGTGGCGAGGCACTGTGCTGCAATGCACAGTTGGAGCATTTCACATGCGCCGAAGGGGGTGCAGCAGATTGGCCTTCGTCTCTGTTCGGGTTCGTTCTCTTCCCGAATATTCTCCGATTCGTTTTCCGTTTCCGTCTTCAGTGTCTAGAAGTTTATGGTTTTCTGAATTTGACGGTGTCTGTCATTCAGTCGTGCTCCCAGAGTACCAATGTGTTACAAGCTTTGCAACAGAAGTTCCCAGCCGCGTCAAAGACTCAGTTAAGGAATAAAGTGCGGGAGATATCAGATTTTTGTGGATATCCATTGGCAGGTTCGAACCCCGAAGCTGTCAAAGTGGTCAAGCACTGTGCTACAATGCACAGTTGGAGCATTTCACATGCGCCGAATGGATTTATCTTGGGGCTAGGAAGCCTTTGGGTTCCCCTTGACAAAGACTACCTCAACGCCCACAATGCCGCTCGTGCCCTGGTCGGAGTCAAGCCATTGACATGGAGCAACTCTCTACCAGCCTACGCCCAGCAATACCCAAGCAAGAGAATTGCAGACTGCAAATCGGAGCATTCTTCCGGTCCCTACGGTGAGAACATTGCCGAAGCCTCGTACCCGATAACGGGCTCGAGAGCAGTGGAATTATGGGTTGGGTGCGCTAGGGTTAAGTGCAACAGTGGGTGGTGGTTCGTCACTTGCAACTACAACCCTCCCGGTAACATTGTTGGGGAACGGCCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

265

Amino Acids

29.18

Weight (kDa)

8.43

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cac1_C PF21796 81 - 120 1.5e-10 Chromatin assembly factor 1 subunit Cac1, C-terminal domain
CAP PF00188 169 - 226 1e-05 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 524
AccII CGCG 1 cut(s) 311
AciI CCGC 3 cut(s) 309, 340, 522
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 2 cut(s) 271, 668
AfiI CCNNNNNNNGG 4 cut(s) 42, 374, 676, 677
AjnI CCWGG 1 cut(s) 531
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AluBI AGCT 3 cut(s) 60, 287, 392
AluI AGCT 3 cut(s) 60, 287, 392
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 682
AoxI GGCC 5 cut(s) 4, 9, 14, 137, 788
ApeKI GCWGC 2 cut(s) 84, 128
ApoI RAATTY 1 cut(s) 232
AspA2I CCTAGG 1 cut(s) 41
AspLEI GCGC 3 cut(s) 116, 448, 713
AspS9I GGNCC 4 cut(s) 4, 9, 14, 635
AsuC2I CCSGG 3 cut(s) 8, 13, 768
AsuHPI GGTGA 1 cut(s) 656
AsuII TTCGAA 2 cut(s) 48, 380
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 1 cut(s) 635
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 683
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 71, 140
BceAI ACGGC 1 cut(s) 775
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 533
BcnI CCSGG 3 cut(s) 8, 13, 768
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 4 cut(s) 42, 212, 470, 714
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 85, 129, 309, 522
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 4 cut(s) 86, 130, 310, 523
Bme1390I CCNGG 4 cut(s) 8, 13, 533, 768
Bme18I GGWCC 1 cut(s) 635
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 4 cut(s) 4, 9, 14, 635
BmiI GGNNCC 2 cut(s) 486, 637
BmrFI CCNGG 4 cut(s) 8, 13, 533, 768
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 550, 582
Bpu14I TTCGAA 2 cut(s) 48, 380
BpuMI CCSGG 3 cut(s) 8, 13, 768
BsaJI CCNNGG 2 cut(s) 41, 531
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 374, 676, 677
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 94, 651
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 41, 531
BseLI CCNNNNNNNGG 4 cut(s) 42, 374, 676, 677
BseMI GCAATG 2 cut(s) 94, 651
BseMII CTCAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 532
BseX3I CGGCCG 1 cut(s) 788
BseXI GCAGC 2 cut(s) 71, 140
BseYI CCCAGC 2 cut(s) 304, 582
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 5 cut(s) 6, 11, 16, 139, 790
BsiEI CGRYCG 1 cut(s) 791
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 5 cut(s) 7, 12, 17, 633, 768
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 4 cut(s) 42, 374, 676, 677
BsmAI GTCTC 1 cut(s) 150
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 621
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 5 cut(s) 6, 11, 16, 139, 790
BsoBI CYCGRG 1 cut(s) 682
Bsp119I TTCGAA 2 cut(s) 48, 380
Bsp1286I GDGCHC 3 cut(s) 263, 532, 683
BspACI CCGC 3 cut(s) 309, 340, 522
BspANI GGCC 5 cut(s) 6, 11, 16, 139, 790
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 486, 637
BspMI ACCTGC 1 cut(s) 365
BspT104I TTCGAA 2 cut(s) 48, 380
BsrBI CCGCTC 1 cut(s) 524
BsrDI GCAATG 2 cut(s) 94, 651
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 41, 531
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 7 cut(s) 81, 96, 241, 413, 428, 644, 731
Bst6I CTCTTC 1 cut(s) 170
BstBI TTCGAA 2 cut(s) 48, 380
BstDEI CTNAG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 3 cut(s) 116, 448, 713
BstMAI GTCTC 1 cut(s) 150
BstMCI CGRYCG 1 cut(s) 791
BstMWI GCNNNNNNNGC 2 cut(s) 518, 527
BstNI CCWGG 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 114, 446
BstSCI CCNGG 4 cut(s) 6, 11, 531, 766
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 71, 140
BstV2I GAAGAC 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 555
BstZI CGGCCG 1 cut(s) 788
BsuRI GGCC 5 cut(s) 6, 11, 16, 139, 790
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 5 cut(s) 77, 212, 409, 696, 736
BveI ACCTGC 1 cut(s) 365
CfoI GCGC 3 cut(s) 116, 448, 713
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 4 cut(s) 4, 9, 14, 635
CseI GACGC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 270, 667
CviAII CATG 3 cut(s) 111, 443, 555
CviQI GTAC 2 cut(s) 270, 667
DdeI CTNAG 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 788
EagI CGGCCG 1 cut(s) 788
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 788
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 683
Eco32I GATATC 2 cut(s) 348, 365
Eco47I GGWCC 1 cut(s) 635
Eco52I CGGCCG 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 531
EcoRV GATATC 2 cut(s) 348, 365
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 3 cut(s) 114, 446, 558
FaiI YATR 5 cut(s) 112, 222, 444, 556, 700
FaqI GGGAC 1 cut(s) 621
FatI CATG 3 cut(s) 110, 442, 554
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 85, 129, 309, 522
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 4 cut(s) 85, 129, 309, 522
FspBI CTAG 4 cut(s) 42, 212, 470, 714
GlaI GCGC 3 cut(s) 115, 447, 712
GluI GCNGC 4 cut(s) 85, 129, 309, 522
GsaI CCCAGC 2 cut(s) 308, 586
HaeIII GGCC 5 cut(s) 6, 11, 16, 139, 790
HapII CCGG 5 cut(s) 7, 12, 17, 633, 768
HgaI GACGC 1 cut(s) 300
HhaI GCGC 3 cut(s) 116, 448, 713
Hin1II CATG 3 cut(s) 114, 446, 558
Hin6I GCGC 3 cut(s) 114, 446, 711
HinP1I GCGC 3 cut(s) 114, 446, 711
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 3 cut(s) 183, 319, 540
HpaII CCGG 5 cut(s) 7, 12, 17, 633, 768
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 5 cut(s) 182, 231, 352, 539, 622
Hpy188III TCNNGA 3 cut(s) 169, 212, 684
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 113, 150
HpyCH4III ACNGT 7 cut(s) 81, 96, 241, 413, 428, 644, 731
HpyCH4V TGCA 9 cut(s) 87, 92, 128, 292, 424, 608, 615, 726, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 527
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 3 cut(s) 114, 446, 558
HspAI GCGC 3 cut(s) 114, 446, 711
LmnI GCTCC 5 cut(s) 100, 266, 432, 558, 622
Lsp1109I GCAGC 2 cut(s) 71, 140
MaeI CTAG 4 cut(s) 42, 212, 470, 714
MaeIII GTNAC 3 cut(s) 279, 745, 770
MbiI CCGCTC 1 cut(s) 524
MboII GAAGA 3 cut(s) 157, 194, 621
MhlI GDGCHC 3 cut(s) 263, 532, 683
MluCI AATT 3 cut(s) 232, 603, 695
MlyI GAGTC 2 cut(s) 313, 549
MmeI TCCRAC 3 cut(s) 78, 410, 517
MnlI CCTC 4 cut(s) 67, 515, 673, 774
MseI TTAA 2 cut(s) 326, 720
MslI CAYNNNNRTG 1 cut(s) 553
MspI CCGG 5 cut(s) 7, 12, 17, 633, 768
MspR9I CCNGG 4 cut(s) 8, 13, 533, 768
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 518, 527
NciI CCSGG 3 cut(s) 8, 13, 768
NlaIII CATG 3 cut(s) 114, 446, 558
NlaIV GGNNCC 2 cut(s) 486, 637
NmuCI GTSAC 1 cut(s) 745
NspI RCATGY 2 cut(s) 114, 446
NspV TTCGAA 2 cut(s) 48, 380
PaeR7I CTCGAG 1 cut(s) 682
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 183
PflFI GACNNNGTC 1 cut(s) 241
PkrI GCNGC 4 cut(s) 86, 130, 310, 523
PleI GAGTC 2 cut(s) 313, 548
PpsI GAGTC 2 cut(s) 313, 548
Psp6I CCWGG 1 cut(s) 531
PspFI CCCAGC 2 cut(s) 304, 582
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 486, 637
PspPI GGNCC 4 cut(s) 4, 9, 14, 635
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 2 cut(s) 271, 668
RsaNI GTAC 2 cut(s) 270, 667
RseI CAYNNNNRTG 1 cut(s) 553
SaqAI TTAA 2 cut(s) 326, 720
SatI GCNGC 4 cut(s) 85, 129, 309, 522
Sau96I GGNCC 4 cut(s) 4, 9, 14, 635
SchI GAGTC 2 cut(s) 313, 549
ScrFI CCNGG 4 cut(s) 8, 13, 533, 768
SduI GDGCHC 3 cut(s) 263, 532, 683
SetI ASST 7 cut(s) 43, 47, 62, 289, 379, 394, 507
Sfr274I CTCGAG 1 cut(s) 682
SfuI TTCGAA 2 cut(s) 48, 380
SinI GGWCC 1 cut(s) 635
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 3 cut(s) 232, 603, 695
SsiI CCGC 3 cut(s) 309, 340, 522
SspI AATATT 1 cut(s) 175
SspMI CTAG 4 cut(s) 42, 212, 470, 714
StyD4I CCNGG 4 cut(s) 6, 11, 531, 766
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 7 cut(s) 81, 96, 241, 413, 428, 644, 731
TaqI TCGA 3 cut(s) 48, 380, 683
TasI AATT 3 cut(s) 232, 603, 695
TauI GCSGC 2 cut(s) 311, 524
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 326, 720
Tru9I TTAA 2 cut(s) 326, 720
TscAI CASTG 5 cut(s) 84, 212, 416, 696, 736
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 2 cut(s) 84, 128
Tsp45I GTSAC 1 cut(s) 745
TspGWI ACGGA 2 cut(s) 182, 188
TspRI CASTG 5 cut(s) 84, 212, 416, 696, 736
Tth111I GACNNNGTC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 1 cut(s) 232
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 2 cut(s) 114, 446
XhoI CTCGAG 1 cut(s) 682
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 4 cut(s) 42, 212, 470, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.