Rorug06G0255700

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
N/A
Physical Location & Seq
Reverse (-)
40193012 .. 40195648
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0255700.1

Sequence Viewer

Length: 1107 bp
ATGAAAGAAAACTCCCAATTCATAGTTTTCATCACCATCACCATCACCATTTTTGGCTTAACAGCCATAGTGAATTCCCAAACAGATTCCTGCAGCTCAAGTCTAAACCTCCAGAATGTCAATCTGCCCTTTGATGCAGCTTCCCTCAACTGCCATGCTGTTTGGGATTCTCAGAGTTACATCCTCAGATACTCACAGACCACACCAGGAACATGGACCTTTGTTCTCTCAGCACCCGCAGCAAATTCCTACATAGCAATGGGGTTCTCAAGCAATGGCCAGATGACAGGGTCCAGTGCGATTGTGGGATGGGTGTCCTCAACAGAGGGAGGAGTAATTAAGCGGTACTACTTAGGTGGGACTTCATCAGACCTTGTGGAGGTTGACAAAGGGAACCTAGTTCTTACCAACTTCTCCTTCATCACAAATCAGTCTTCCACGGTATACATGGGGTTCCAGTTGGTGGCTGACCAACCACAAAGTAGGCTCATATACTCAGTTGGCCCAACTGGGTTGCTTCCTGTTGCACCTAACTACAGGTTGACAGAGCACTTTGACAAGGTCTCCACCACCATAAATTACATTACAGGTCAAACATCGAGCACAGGAAGTCCATATACAAGATTAAGAAGGAGCCACGGAGCACTGAATATGCTTGGATGGGGCATTCTGATGATAATTGGAATAATAGTTGCTCGTCACTTAAAGTCCTATGATCCACTTTGGTTTTACCTTCATATTGGCATCCAATCATTCGCATTTGTGTTTGGAATAATTGGTGTCATTTGTGGATTTGTCTTAGAAAATAAGACTAATGCTGATGTCTCCGCCCACAAAGCTCTTGGTATCTTCATTCTTGTGCTTGGATGTCTTCAGGTGATGGCATTTTTGGCTCGACCAAATAAGGTATCGAAAGCACGAAAATACTGGAATTGGTACCATCAAAGCGTGGGAAGGCTTCTGATTATTCTTGCAGTTGCAAATGTTTTCTACGGAATCCATTTGGGAGATGAAGGAACGGGATGGAATGCTGGATATGGAGCTGTTCTTGCTATCTTGGTTGTTATTGCTGTTATTCTCGAATTAAAATTGTGGTTTAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

368

Amino Acids

40.34

Weight (kDa)

9.17

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 63 - 137 5.2e-07 DOMON domain
Cytochrom_B561 PF03188 213 - 333 1.7e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 936
AccB7I CCANNNNNTGG 1 cut(s) 463
AccI GTMKAC 1 cut(s) 444
AciI CCGC 3 cut(s) 237, 343, 828
AclWI GGATC 1 cut(s) 710
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 73, 244
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 2 cut(s) 347, 938
AfiI CCNNNNNNNGG 2 cut(s) 379, 463
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 96, 140, 839, 1043
AluI AGCT 4 cut(s) 96, 140, 839, 1043
Alw21I GWGCWC 3 cut(s) 552, 605, 646
Alw26I GTCTC 2 cut(s) 568, 829
AlwI GGATC 1 cut(s) 710
AoxI GGCC 2 cut(s) 277, 502
ApeKI GCWGC 3 cut(s) 93, 137, 239
ApoI RAATTY 2 cut(s) 73, 244
Asp718I GGTACC 1 cut(s) 936
AspS9I GGNCC 3 cut(s) 216, 291, 503
AsuHPI GGTGA 4 cut(s) 25, 31, 37, 889
AvaII GGWCC 2 cut(s) 216, 291
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 1 cut(s) 936
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BbsI GAAGAC 2 cut(s) 426, 863
Bbv12I GWGCWC 3 cut(s) 552, 605, 646
BbvI GCAGC 3 cut(s) 105, 149, 251
BccI CCATC 7 cut(s) 44, 50, 303, 654, 874, 948, 1017
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 568, 829
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 2 cut(s) 91, 535
BisI GCNGC 3 cut(s) 94, 138, 240
BlsI GCNGC 3 cut(s) 95, 139, 241
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 216, 291
BmgT120I GGNCC 3 cut(s) 216, 291, 503
BmiI GGNNCC 5 cut(s) 292, 395, 455, 635, 938
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 124, 753
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 426, 863
BpmI CTGGAG 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 82, 253
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 438, 637
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 463
Bse1I ACTGG 4 cut(s) 294, 457, 514, 932
Bse3DI GCAATG 2 cut(s) 264, 280
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 438, 637
BseGI GGATG 6 cut(s) 180, 314, 665, 744, 872, 1028
BseLI CCNNNNNNNGG 2 cut(s) 379, 463
BseMI GCAATG 2 cut(s) 264, 280
BseMII CTCAG 4 cut(s) 185, 199, 243, 510
BseNI ACTGG 4 cut(s) 294, 457, 514, 932
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 105, 149, 251
BshFI GGCC 2 cut(s) 279, 504
BshNI GGYRCC 1 cut(s) 936
BsiHKAI GWGCWC 3 cut(s) 552, 605, 646
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 379, 463
BsmAI GTCTC 2 cut(s) 568, 829
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 2 cut(s) 666, 1033
BsnI GGCC 2 cut(s) 279, 504
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 3 cut(s) 552, 605, 646
Bsp143I GATC 1 cut(s) 715
BspACI CCGC 3 cut(s) 237, 343, 828
BspANI GGCC 2 cut(s) 279, 504
BspCNI CTCAG 4 cut(s) 184, 198, 242, 509
BspLI GGNNCC 5 cut(s) 292, 395, 455, 635, 938
BspMAI CTGCAG 1 cut(s) 95
BspPI GGATC 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 936
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 2 cut(s) 264, 280
BsrI ACTGG 4 cut(s) 294, 457, 514, 932
BssECI CCNNGG 2 cut(s) 438, 637
BssMI GATC 1 cut(s) 715
BssNAI GTATAC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 442
BstDEI CTNAG 6 cut(s) 171, 185, 229, 352, 496, 799
BstDSI CCRYGG 2 cut(s) 438, 637
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 6 cut(s) 180, 314, 665, 744, 872, 1028
BstKTI GATC 1 cut(s) 718
BstMAI GTCTC 2 cut(s) 568, 829
BstMBI GATC 1 cut(s) 715
BstMWI GCNNNNNNNGC 4 cut(s) 239, 836, 890, 1049
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 91, 535
BstV1I GCAGC 3 cut(s) 105, 149, 251
BstV2I GAAGAC 2 cut(s) 426, 863
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 279, 504
BtgI CCRYGG 2 cut(s) 438, 637
BtsCI GGATG 6 cut(s) 180, 314, 665, 744, 872, 1028
BtsIMutI CAGTG 2 cut(s) 301, 644
Cfr13I GGNCC 3 cut(s) 216, 291, 503
Csp6I GTAC 2 cut(s) 346, 937
CviAII CATG 3 cut(s) 155, 213, 448
CviQI GTAC 2 cut(s) 346, 937
DdeI CTNAG 6 cut(s) 171, 185, 229, 352, 496, 799
DpnI GATC 1 cut(s) 717
DpnII GATC 1 cut(s) 715
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 817
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 216, 291
Eco57I CTGAAG 1 cut(s) 857
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 3 cut(s) 158, 216, 451
FaqI GGGAC 1 cut(s) 373
FatI CATG 3 cut(s) 154, 212, 447
FauI CCCGC 1 cut(s) 244
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 94, 138, 240
FokI GGATG 6 cut(s) 167, 321, 672, 731, 879, 1035
Fsp4HI GCNGC 3 cut(s) 94, 138, 240
FspBI CTAG 1 cut(s) 398
GluI GCNGC 3 cut(s) 94, 138, 240
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 2 cut(s) 279, 504
Hin1II CATG 3 cut(s) 158, 216, 451
HincII GTYRAC 2 cut(s) 385, 543
HindII GTYRAC 2 cut(s) 385, 543
HinfI GANTC 3 cut(s) 86, 167, 996
HphI GGTGA 4 cut(s) 25, 31, 37, 889
Hpy166II GTNNAC 3 cut(s) 385, 445, 543
Hpy188I TCNGA 5 cut(s) 174, 188, 370, 672, 963
Hpy188III TCNNGA 2 cut(s) 112, 1079
Hpy8I GTNNAC 3 cut(s) 385, 445, 543
HpyAV CCTTC 5 cut(s) 427, 624, 743, 948, 1007
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 93, 137, 527, 974, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 836, 890, 1049
HpyF3I CTNAG 6 cut(s) 171, 185, 229, 352, 496, 799
Hsp92II CATG 3 cut(s) 158, 216, 451
KpnI GGTACC 1 cut(s) 940
Kzo9I GATC 1 cut(s) 715
LmnI GCTCC 3 cut(s) 633, 641, 1040
Lsp1109I GCAGC 3 cut(s) 105, 149, 251
LweI GCATC 2 cut(s) 124, 753
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 176, 698
MalI GATC 1 cut(s) 717
MboI GATC 1 cut(s) 715
MboII GAAGA 3 cut(s) 426, 841, 863
MhlI GDGCHC 3 cut(s) 552, 605, 646
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 7 cut(s) 119, 155, 194, 319, 323, 328, 373
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MseI TTAA 5 cut(s) 59, 339, 626, 704, 1085
MslI CAYNNNNRTG 3 cut(s) 257, 671, 857
Msp20I TGGCCA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 666, 1033
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 239, 836, 890, 1049
NdeII GATC 1 cut(s) 715
NlaIII CATG 3 cut(s) 158, 216, 451
NlaIV GGNNCC 5 cut(s) 292, 395, 455, 635, 938
NmuCI GTSAC 1 cut(s) 698
PctI GAATGC 2 cut(s) 666, 1033
PfeI GAWTC 3 cut(s) 86, 167, 996
PflFI GACNNNGTC 2 cut(s) 289, 560
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 95, 139, 241
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 5 cut(s) 292, 395, 455, 635, 938
PspPI GGNCC 3 cut(s) 216, 291, 503
PstI CTGCAG 1 cut(s) 95
PsyI GACNNNGTC 2 cut(s) 289, 560
RsaI GTAC 2 cut(s) 347, 938
RsaNI GTAC 2 cut(s) 346, 937
RseI CAYNNNNRTG 3 cut(s) 257, 671, 857
SaqAI TTAA 5 cut(s) 59, 339, 626, 704, 1085
SatI GCNGC 3 cut(s) 94, 138, 240
Sau3AI GATC 1 cut(s) 715
Sau96I GGNCC 3 cut(s) 216, 291, 503
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 3 cut(s) 552, 605, 646
SfaNI GCATC 2 cut(s) 124, 753
SfcI CTRYAG 2 cut(s) 91, 535
SinI GGWCC 2 cut(s) 216, 291
SmiMI CAYNNNNRTG 3 cut(s) 257, 671, 857
SmlI CTYRAG 2 cut(s) 97, 268
SmoI CTYRAG 2 cut(s) 97, 268
SsiI CCGC 3 cut(s) 237, 343, 828
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 4 cut(s) 599, 895, 911, 1080
TfiI GAWTC 3 cut(s) 86, 167, 996
Tru1I TTAA 5 cut(s) 59, 339, 626, 704, 1085
Tru9I TTAA 5 cut(s) 59, 339, 626, 704, 1085
TscAI CASTG 2 cut(s) 301, 651
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 3 cut(s) 93, 137, 239
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 8 cut(s) 10, 17, 19, 354, 409, 725, 841, 1026
TspGWI ACGGA 2 cut(s) 654, 1008
TspRI CASTG 2 cut(s) 301, 651
Tth111I GACNNNGTC 2 cut(s) 289, 560
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 216, 291
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 2 cut(s) 73, 244
XcmI CCANNNNNNNNNTGG 3 cut(s) 301, 445, 839
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.