Rorug06G0256200

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
N/A
Physical Location & Seq
Forward (+)
40234555 .. 40235353
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0256200.1

Sequence Viewer

Length: 198 bp
ATGTTGACGTCATTAGGGATATCAATGAAAAATCAGAGAAAGAAGAGCAAGAGGGGGACCTCATCCTCACGCTTGCAGCACAGAGTGGCAGCACTAGCATTAAACGAGGTTTCATCAGCAGAGGGCGCTGCTGTTCACTATACACTGTTGGATATACTGATGAAAAGTAGGAGAACGGAGAAAGCGGAAATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.2

Weight (kDa)

10.36

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AciI CCGC 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 76, 89, 128
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 57
AvaII GGWCC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 88, 101, 115
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 3 cut(s) 77, 90, 129
BlsI GCNGC 3 cut(s) 78, 91, 130
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 8
BseGI GGATG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 88, 101, 115
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMWI GCNNNNNNNGC 2 cut(s) 95, 125
BstV1I GCAGC 3 cut(s) 88, 101, 115
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 57
EcoRV GATATC 1 cut(s) 21
FaiI YATR 2 cut(s) 141, 155
FaqI GGGAC 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 77, 90, 129
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 77, 90, 129
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 77, 90, 129
HaeII RGCGCY 1 cut(s) 129
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 8
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 6, 136
Hpy188I TCNGA 1 cut(s) 36
Hpy8I GTNNAC 2 cut(s) 6, 136
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 125
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 8
HspAI GCGC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 38
Lsp1109I GCAGC 3 cut(s) 88, 101, 115
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 8
MboII GAAGA 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 5 cut(s) 45, 70, 76, 100, 115
MseI TTAA 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 95, 125
NlaIV GGNNCC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 78, 91, 130
PpuMI RGGWCCY 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 57
PspPPI RGGWCCY 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 77, 90, 129
Sau96I GGNCC 1 cut(s) 57
SetI ASST 3 cut(s) 11, 62, 111
SgeI CNNG 5 cut(s) 61, 81, 85, 107, 118
SinI GGWCC 1 cut(s) 57
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 11
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 150
TseI GCWGC 3 cut(s) 76, 89, 128
TspDTI ATGAA 3 cut(s) 41, 102, 176
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 57
XspI CTAG 1 cut(s) 95
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.