Rorug07G0311300

Receptor protein kinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
N/A
Physical Location & Seq
Forward (+)
31181651 .. 31183602
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0311300.1

Sequence Viewer

Length: 648 bp
ATGGTTACAACTTTGAAAGCAAGTTGTTTGACATCGCCGGATTTGGGTCAATACAACTTTGAAAGCAACTTTGAAAGCAAGGATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCCGGCTTCATTTCCGAGATGCAAGAGATCGGTCTCCAAGAAAATCTGCTCCGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGGATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCATAATGTGGATATCTTGAGGGATTTTTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGGTGCTAAAATGAAGGTCAGAAATCAACAAGGAGTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

215

Amino Acids

23.96

Weight (kDa)

8.78

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 528
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 44, 460, 605
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 4 cut(s) 16, 62, 74, 358
AjiI CACGTC 2 cut(s) 111, 328
AjnI CCWGG 3 cut(s) 280, 337, 598
Alw26I GTCTC 2 cut(s) 95, 151
AlwI GGATC 1 cut(s) 528
AoxI GGCC 2 cut(s) 334, 596
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 281
BciT130I CCWGG 3 cut(s) 282, 339, 600
BcoDI GTCTC 2 cut(s) 95, 151
BfaI CTAG 1 cut(s) 252
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 3 cut(s) 282, 339, 600
BmgBI CACGTC 2 cut(s) 111, 328
BmgT120I GGNCC 1 cut(s) 335
BmrFI CCNGG 3 cut(s) 282, 339, 600
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 490, 564
BsaBI GATNNNNATC 1 cut(s) 407
BsaI GGTCTC 2 cut(s) 95, 151
BsaJI CCNNGG 2 cut(s) 280, 337
BsaWI WCCGGW 1 cut(s) 642
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 460, 605
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 3 cut(s) 282, 339, 600
BseDI CCNNGG 2 cut(s) 280, 337
BseGI GGATG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 3 cut(s) 44, 460, 605
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 211
BshFI GGCC 2 cut(s) 336, 598
BsiSI CCGG 3 cut(s) 38, 116, 643
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 44, 460, 605
BsmAI GTCTC 2 cut(s) 95, 151
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 336, 598
Bso31I GGTCTC 2 cut(s) 95, 151
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 140, 520
BspACI CCGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 336, 598
BspCNI CTCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 528
BspTNI GGTCTC 2 cut(s) 95, 151
BsrBI CCGCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 280, 337
BssMI GATC 2 cut(s) 140, 520
Bst2UI CCWGG 3 cut(s) 282, 339, 600
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 4 cut(s) 117, 198, 447, 596
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 2 cut(s) 143, 523
BstMAI GTCTC 2 cut(s) 95, 151
BstMBI GATC 2 cut(s) 140, 520
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 3 cut(s) 282, 339, 600
BstSCI CCNGG 3 cut(s) 280, 337, 598
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 336, 598
BtgZI GCGATG 1 cut(s) 18
BtrI CACGTC 2 cut(s) 111, 328
BtsCI GGATG 1 cut(s) 231
Cac8I GCNNGC 4 cut(s) 117, 198, 447, 596
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 502
CviAII CATG 2 cut(s) 323, 566
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 1 cut(s) 261
DpnI GATC 2 cut(s) 142, 522
DpnII GATC 2 cut(s) 140, 520
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 281
Eco31I GGTCTC 2 cut(s) 95, 151
Eco32I GATATC 2 cut(s) 466, 514
EcoRII CCWGG 3 cut(s) 280, 337, 598
EcoRV GATATC 2 cut(s) 466, 514
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 2 cut(s) 326, 569
FaiI YATR 9 cut(s) 170, 324, 413, 426, 428, 456, 510, 562, 567
FaqI GGGAC 1 cut(s) 404
FatI CATG 2 cut(s) 322, 565
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 281
FspBI CTAG 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 2 cut(s) 336, 598
HapII CCGG 3 cut(s) 38, 116, 643
Hin1II CATG 2 cut(s) 326, 569
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 2 cut(s) 351, 639
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 3 cut(s) 38, 116, 643
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 4 cut(s) 129, 187, 262, 626
Hpy188III TCNNGA 4 cut(s) 217, 358, 469, 581
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 578, 613
HpyCH4IV ACGT 2 cut(s) 110, 327
HpyCH4V TGCA 5 cut(s) 135, 380, 449, 483, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 2 cut(s) 110, 327
Hsp92II CATG 2 cut(s) 326, 569
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 140, 520
LmnI GCTCC 3 cut(s) 167, 187, 487
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 252
MaeII ACGT 2 cut(s) 110, 327
MaeIII GTNAC 3 cut(s) 4, 284, 527
MalI GATC 2 cut(s) 142, 522
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 140, 520
MboII GAAGA 3 cut(s) 96, 253, 346
MfeI CAATTG 1 cut(s) 272
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 648
MnlI CCTC 2 cut(s) 465, 598
MroNI GCCGGC 1 cut(s) 115
MseI TTAA 2 cut(s) 300, 534
MspI CCGG 3 cut(s) 38, 116, 643
MspR9I CCNGG 3 cut(s) 282, 339, 600
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 3 cut(s) 282, 339, 600
MwoI GCNNNNNNNGC 1 cut(s) 187
NaeI GCCGGC 1 cut(s) 117
NdeII GATC 2 cut(s) 140, 520
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 2 cut(s) 326, 569
NmuCI GTSAC 1 cut(s) 284
PceI AGGCCT 1 cut(s) 598
PctI GAATGC 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 460
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
Psp6I CCWGG 3 cut(s) 280, 337, 598
PspGI CCWGG 3 cut(s) 280, 337, 598
PspPI GGNCC 1 cut(s) 335
PsrI GAACNNNNNNTAC 2 cut(s) 485, 517
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 300, 534
Sau3AI GATC 2 cut(s) 140, 520
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 1 cut(s) 648
ScrFI CCNGG 3 cut(s) 282, 339, 600
SduI GDGCHC 1 cut(s) 281
SetI ASST 7 cut(s) 113, 286, 330, 387, 418, 589, 624
SfaNI GCATC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 469, 579
SmoI CTYRAG 2 cut(s) 469, 579
Sse9I AATT 1 cut(s) 272
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 280, 337, 598
TaiI ACGT 2 cut(s) 113, 330
TaqII GACCGA 2 cut(s) 133, 202
TasI AATT 1 cut(s) 272
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 2 cut(s) 300, 534
Tru9I TTAA 2 cut(s) 300, 534
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 111, 333, 632
TspGWI ACGGA 3 cut(s) 154, 251, 500
Van91I CCANNNNNTGG 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.