Rorug07G0327000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
N/A
Physical Location & Seq
Forward (+)
35733423 .. 35733929
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327000.1

Sequence Viewer

Length: 507 bp
ATGCAGCCGGTGAACGTTCTGGTTTGGAATTGTTGGGGTATCGTAAACAGAGAGACTCAGCATGCTCCTATGGATCTGATTAGGGCTAAGCGACCAAATCTCATCTTTTTGGTGGAAACTCTAGCACAACAGAATATCATAGACTCCCTTACGGGACGTCTAGGCTTTAAGGGGAATTTATGTTTTCCTCAGGACCATGAAACTCAATCACATGTGTTTGCGCTGATATGGAATTCGGACCTGCATGCTAGTTTATGTTCTTACTCTCCAAACCACATCGATGTGGACATCAGCTCTAGTCCGGGTGAACCTGCTCTTTGGCGTTTCACTGGGATCTATAGAGTCGCCTCTAAGTTGGAGCGACATCGAACATGGGACCTGATTGAAGCCTTAGCTGCAGGAGGCTATGAGTTGTCGTGGCTCATGGCCGGTGACTTTAATGAAATTCTCAACAATGTCGCATTTCCCCAGCAAATGCACCTATGCTTCGCTTCTAGCAGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

168

Amino Acids

19.08

Weight (kDa)

5.93

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 160
Acc36I ACCTGC 2 cut(s) 249, 319
AclI AACGTT 1 cut(s) 15
AclWI GGATC 2 cut(s) 81, 341
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 3 cut(s) 175, 232, 444
AcyI GRCGYC 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 1 cut(s) 386
AluBI AGCT 2 cut(s) 294, 395
AluI AGCT 2 cut(s) 294, 395
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 81, 341
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 4, 395
ApoI RAATTY 3 cut(s) 175, 232, 444
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 3 cut(s) 193, 238, 376
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 22, 317, 443
AvaII GGWCC 3 cut(s) 193, 238, 376
AxyI CCTNAGG 1 cut(s) 189
BbvI GCAGC 2 cut(s) 16, 382
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 5 cut(s) 122, 161, 249, 297, 495
BfmI CTRYAG 2 cut(s) 337, 396
BfuAI ACCTGC 2 cut(s) 249, 319
BisI GCNGC 2 cut(s) 5, 396
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 2 cut(s) 6, 397
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 3 cut(s) 193, 238, 376
BmgT120I GGNCC 3 cut(s) 193, 238, 376
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 157
Bse118I RCCGGY 2 cut(s) 7, 428
Bse1I ACTGG 1 cut(s) 334
Bse21I CCTNAGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 279
BseMII CTCAG 2 cut(s) 71, 203
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 16, 382
BseYI CCCAGC 1 cut(s) 468
BshFI GGCC 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 279
BsiSI CCGG 3 cut(s) 8, 302, 429
BslFI GGGAC 2 cut(s) 168, 389
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 2 cut(s) 168, 389
BsnI GGCC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 73, 333
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 2 cut(s) 70, 202
BspDI ATCGAT 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 377
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 2 cut(s) 249, 319
BspPI GGATC 2 cut(s) 81, 341
BsrFI RCCGGY 2 cut(s) 7, 428
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 7, 428
BssMI GATC 2 cut(s) 73, 333
BssNI GRCGYC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 63, 246
BstDEI CTNAG 5 cut(s) 57, 87, 189, 351, 391
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 76, 336
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 73, 333
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNSI RCATGY 3 cut(s) 65, 215, 248
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 2 cut(s) 337, 396
BstV1I GCAGC 2 cut(s) 16, 382
BstX2I RGATCY 2 cut(s) 73, 333
BstYI RGATCY 2 cut(s) 73, 333
Bsu15I ATCGAT 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 1 cut(s) 428
BsuTUI ATCGAT 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 2 cut(s) 249, 319
Cac8I GCNNGC 2 cut(s) 63, 246
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 2 cut(s) 7, 428
Cfr13I GGNCC 3 cut(s) 193, 238, 376
ClaI ATCGAT 1 cut(s) 279
CviAII CATG 6 cut(s) 62, 197, 212, 245, 372, 424
CviJI RGCY 9 cut(s) 7, 86, 165, 294, 389, 395, 405, 421, 428
CviKI_1 RGCY 9 cut(s) 7, 86, 165, 294, 389, 395, 405, 421, 428
DdeI CTNAG 5 cut(s) 57, 87, 189, 351, 391
DpnI GATC 2 cut(s) 75, 335
DpnII GATC 2 cut(s) 73, 333
EaeI YGGCCR 1 cut(s) 426
Eco47I GGWCC 3 cut(s) 193, 238, 376
Eco81I CCTNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 232
FaeI CATG 6 cut(s) 65, 200, 215, 248, 375, 427
FaqI GGGAC 2 cut(s) 168, 389
FatI CATG 6 cut(s) 61, 196, 211, 244, 371, 423
Fnu4HI GCNGC 2 cut(s) 5, 396
Fsp4HI GCNGC 2 cut(s) 5, 396
FspBI CTAG 5 cut(s) 122, 161, 249, 297, 495
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 5, 396
GsaI CCCAGC 1 cut(s) 472
HaeIII GGCC 1 cut(s) 428
HapII CCGG 3 cut(s) 8, 302, 429
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 6 cut(s) 65, 200, 215, 248, 375, 427
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 3 cut(s) 55, 143, 342
HpaII CCGG 3 cut(s) 8, 302, 429
HphI GGTGA 3 cut(s) 22, 317, 443
Hpy166II GTNNAC 4 cut(s) 13, 46, 286, 308
Hpy188I TCNGA 2 cut(s) 78, 238
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 4 cut(s) 13, 46, 286, 308
HpyCH4IV ACGT 2 cut(s) 15, 157
HpyCH4V TGCA 4 cut(s) 4, 244, 398, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 5 cut(s) 57, 87, 189, 351, 391
HpySE526I ACGT 2 cut(s) 15, 157
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 6 cut(s) 65, 200, 215, 248, 375, 427
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 2 cut(s) 73, 333
LmnI GCTCC 2 cut(s) 70, 358
Lsp1109I GCAGC 2 cut(s) 16, 382
MaeI CTAG 5 cut(s) 122, 161, 249, 297, 495
MaeII ACGT 2 cut(s) 15, 157
MaeIII GTNAC 1 cut(s) 431
MalI GATC 2 cut(s) 75, 335
MboI GATC 2 cut(s) 73, 333
MflI RGATCY 2 cut(s) 73, 333
MluCI AATT 4 cut(s) 28, 175, 232, 444
MlyI GAGTC 3 cut(s) 49, 137, 351
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 198, 358, 395
MseI TTAA 2 cut(s) 168, 438
MslI CAYNNNNRTG 2 cut(s) 279, 281
MspI CCGG 3 cut(s) 8, 302, 429
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 73, 333
NlaIII CATG 6 cut(s) 65, 200, 215, 248, 375, 427
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 3 cut(s) 65, 215, 248
PaeI GCATGC 2 cut(s) 65, 248
PciI ACATGT 1 cut(s) 211
PkrI GCNGC 2 cut(s) 6, 397
PleI GAGTC 3 cut(s) 49, 137, 350
PpsI GAGTC 3 cut(s) 49, 137, 350
PpuMI RGGWCCY 1 cut(s) 376
PscI ACATGT 1 cut(s) 211
Psp1406I AACGTT 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 3 cut(s) 193, 238, 376
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 2 cut(s) 73, 333
RseI CAYNNNNRTG 2 cut(s) 279, 281
SaqAI TTAA 2 cut(s) 168, 438
SatI GCNGC 2 cut(s) 5, 396
Sau3AI GATC 2 cut(s) 73, 333
Sau96I GGNCC 3 cut(s) 193, 238, 376
SchI GAGTC 3 cut(s) 49, 137, 351
ScrFI CCNGG 1 cut(s) 303
SetI ASST 8 cut(s) 18, 160, 243, 296, 313, 381, 397, 483
SfcI CTRYAG 2 cut(s) 337, 396
SinI GGWCC 3 cut(s) 193, 238, 376
SmiMI CAYNNNNRTG 2 cut(s) 279, 281
SphI GCATGC 2 cut(s) 65, 248
Sse9I AATT 4 cut(s) 28, 175, 232, 444
SspMI CTAG 5 cut(s) 122, 161, 249, 297, 495
StyD4I CCNGG 1 cut(s) 301
TaiI ACGT 2 cut(s) 18, 160
TaqI TCGA 2 cut(s) 279, 367
TasI AATT 4 cut(s) 28, 175, 232, 444
Tru1I TTAA 2 cut(s) 168, 438
Tru9I TTAA 2 cut(s) 168, 438
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 4, 395
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 213, 456
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 3 cut(s) 193, 238, 376
XapI RAATTY 3 cut(s) 175, 232, 444
XceI RCATGY 3 cut(s) 65, 215, 248
XspI CTAG 5 cut(s) 122, 161, 249, 297, 495
ZraI GACGTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.