Rh1AG063600
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
N/A
Physical Location & Seq
Reverse (-)
10655767 .. 10656241
475 bp
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UTR
Exon/CDS
Intron
Rh1AG063600.1

Sequence Viewer

Length: 369 bp
ATGAGAGATGCTCTTCAGACTCCCAATGGCAATCCCCATGAATTCGAAGGCACGCACACTGATCCTTGTCATTTAGATAAGAATGATCTTTCAACCGCTGTTGAAGGCCAACCTGATAGAAGCAATTCATCTGATATGATTGAAGAGCTACTACATGACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTGCATCAGCTACATCAGTCACCAATGCATACCGCCAATGTCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGGGGATAATGATCCTTCTCTTACAAAGAAGAATAATATTTCAACCAATGATGATGACGAATTAGTTAGCAACACCACATCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.66

Weight (kDa)

4.71

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 96, 188, 237
AclWI GGATC 2 cut(s) 56, 287
AcsI RAATTY 1 cut(s) 41
AgsI TTSAA 4 cut(s) 93, 104, 143, 324
AluBI AGCT 2 cut(s) 148, 214
AluI AGCT 2 cut(s) 148, 214
AlwI GGATC 2 cut(s) 56, 287
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BfaI CTAG 1 cut(s) 363
BmsI GCATC 1 cut(s) 217
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 108
BsnI GGCC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 3 cut(s) 61, 85, 292
BspACI CCGC 3 cut(s) 96, 188, 237
BspANI GGCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 56, 287
BspQI GCTCTTC 2 cut(s) 18, 138
BspT104I TTCGAA 1 cut(s) 45
BssMI GATC 3 cut(s) 61, 85, 292
Bst6I CTCTTC 2 cut(s) 18, 138
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 53, 192
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 3 cut(s) 64, 88, 295
BstMBI GATC 3 cut(s) 61, 85, 292
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 53, 192
CviAII CATG 2 cut(s) 38, 155
CviJI RGCY 3 cut(s) 108, 148, 214
CviKI_1 RGCY 3 cut(s) 108, 148, 214
DpnI GATC 3 cut(s) 63, 87, 294
DpnII GATC 3 cut(s) 61, 85, 292
Eam1104I CTCTTC 2 cut(s) 18, 138
EarI CTCTTC 2 cut(s) 18, 138
EciI GGCGGA 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 234
FaeI CATG 2 cut(s) 41, 158
FaiI YATR 6 cut(s) 39, 137, 156, 234, 249, 274
FatI CATG 2 cut(s) 37, 154
FokI GGATG 1 cut(s) 171
FspBI CTAG 1 cut(s) 363
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 2 cut(s) 41, 158
HinfI GANTC 2 cut(s) 19, 173
HphI GGTGA 1 cut(s) 216
Hpy188I TCNGA 2 cut(s) 18, 133
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 41, 98, 306
HpyCH4V TGCA 3 cut(s) 194, 208, 232
Hsp92II CATG 2 cut(s) 41, 158
Kzo9I GATC 3 cut(s) 61, 85, 292
LguI GCTCTTC 2 cut(s) 18, 138
LpnPI CCDG 4 cut(s) 126, 155, 174, 204
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 222
MalI GATC 3 cut(s) 63, 87, 294
MboI GATC 3 cut(s) 61, 85, 292
MboII GAAGA 3 cut(s) 5, 155, 322
MluCI AATT 3 cut(s) 41, 124, 341
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 210, 261
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 124
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 98
NdeII GATC 3 cut(s) 61, 85, 292
NlaIII CATG 2 cut(s) 41, 158
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 234
NspV TTCGAA 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 18, 138
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 252
SapI GCTCTTC 2 cut(s) 18, 138
Sau3AI GATC 3 cut(s) 61, 85, 292
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 115, 150, 202, 216
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 45
SgeI CNNG 8 cut(s) 50, 64, 78, 125, 167, 173, 182, 203
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 3 cut(s) 41, 124, 341
SsiI CCGC 3 cut(s) 96, 188, 237
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 363
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 41, 124, 341
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 4 cut(s) 54, 117, 173, 270
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.