Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12399142 .. 12401090

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG075000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTGCTATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTCGGCCATTTTATGAGCGGTGGAAGATGCTTGAGAAAGAGGTCATAGAGCCTCGGAGTTACAAGTTTGTTGTCAAAACCTGTCACTCAGCAAACGAAGGATGTCATGGTGGCAGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGCTGATACTTTCACTGGTCAGTTCGGAGATTTAATTGCTGATTTAGCCCTTGATGCCACTAGAATAGTTGGAGTGGACCTCGGCCAGGGTTTACGAGAAGTGGATATTAAAAAGTACATCAAGGTTGAGAAGGTTCCTGGTGGCCAGTTGGAAGATTCAGTGGTTCTGAAAGGAGTAATGATTAACAAAGATGTCATTGCTCCTGGAAAAATGAGAAGAAAGATTGTCAATCCGAGGATCATGCTTCTTGATTGTCCTCTTGAGTATAAGAAAGGCGAGAGAACCAAACAAATGCTGAAGCAAAAGAGCTCATCTATTGAAGGTATAGAAAAGTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGCACGCAAATGGTGAAAATGCATGCAAATTGTGTAGAAACTTTCATTATGTTCAAATCTGGAAAATCAGAATAGTTAGCATGTCAAATCCACTTCAGCAGATGGGGAAGGCCCCTATGCTTGAATCTGAACTGTGTTCTACCTCCCACCCAGAAATCCTGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

267

Amino Acids

30.06

Weight (kDa)

9.17

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	71 - 160	6.7e-14	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	162 - 236	2.7e-11	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	18, 58
AciI	CCGC	2 cut(s)	18, 58
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	4 cut(s)	44, 280, 340, 533
AcuI	CTGAAG	2 cut(s)	515, 713
AfaI	GTAC	1 cut(s)	314
AfeI	AGCGCT	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	518, 689, 758
AjnI	CCWGG	3 cut(s)	282, 334, 400
AluBI	AGCT	3 cut(s)	507, 545, 557
AluI	AGCT	3 cut(s)	507, 545, 557
Alw21I	GWGCWC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	624
AoxI	GGCC	5 cut(s)	44, 280, 340, 533, 744
ApeKI	GCWGC	3 cut(s)	545, 548, 625
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	274, 745
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	2 cut(s)	342, 535
BanII	GRGCYC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	532, 535, 612
BccI	CCATC	2 cut(s)	152, 730
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	3 cut(s)	284, 336, 402
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	626
BisI	GCNGC	3 cut(s)	546, 549, 626
BlsI	GCNGC	3 cut(s)	547, 550, 627
Bme1390I	CCNGG	3 cut(s)	284, 336, 402
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	274, 745
BmiI	GGNNCC	2 cut(s)	333, 747
BmrFI	CCNGG	3 cut(s)	284, 336, 402
BmsI	GCATC	2 cut(s)	57, 241
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpuEI	CTTGAG	2 cut(s)	92, 479
BsaJI	CCNNGG	4 cut(s)	92, 277, 283, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	217, 343
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	284, 336, 402
BseDI	CCNNGG	4 cut(s)	92, 277, 283, 431
BseGI	GGATG	2 cut(s)	18, 146
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	3 cut(s)	141, 599, 785
BseNI	ACTGG	2 cut(s)	217, 343
BseXI	GCAGC	3 cut(s)	532, 535, 612
BshFI	GGCC	5 cut(s)	46, 282, 342, 535, 746
BsiHKAI	GWGCWC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	283
BsnI	GGCC	5 cut(s)	46, 282, 342, 535, 746
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	18, 58
BspANI	GGCC	5 cut(s)	46, 282, 342, 535, 746
BspCNI	CTCAG	3 cut(s)	140, 598, 786
BspLI	GGNNCC	2 cut(s)	333, 747
BspPI	GGATC	1 cut(s)	443
BsrBI	CCGCTC	2 cut(s)	18, 58
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	217, 343
BssECI	CCNNGG	4 cut(s)	92, 277, 283, 431
BssMI	GATC	1 cut(s)	435
Bst2UI	CCWGG	3 cut(s)	284, 336, 402
Bst4CI	ACNGT	2 cut(s)	593, 768
BstC8I	GCNNGC	2 cut(s)	639, 658
BstDEI	CTNAG	3 cut(s)	127, 585, 794
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	18, 146
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 554, 563, 634
BstNI	CCWGG	3 cut(s)	284, 336, 402
BstNSI	RCATGY	2 cut(s)	660, 718
BstSCI	CCNGG	3 cut(s)	282, 334, 400
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	532, 535, 612
BsuRI	GGCC	5 cut(s)	46, 282, 342, 535, 746
BtsCI	GGATG	2 cut(s)	18, 146
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	3 cut(s)	160, 210, 363
Cac8I	GCNNGC	2 cut(s)	639, 658
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	274, 745
Csp6I	GTAC	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	6 cut(s)	146, 167, 191, 439, 657, 715
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	127, 585, 794
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	4 cut(s)	44, 280, 340, 533
Ecl136II	GAGCTC	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	274
Eco47III	AGCGCT	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	515, 713
EcoICRI	GAGCTC	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	3 cut(s)	282, 334, 400
EcoT22I	ATGCAT	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	509
FaeI	CATG	6 cut(s)	149, 170, 194, 442, 660, 718
FatI	CATG	6 cut(s)	145, 166, 190, 438, 656, 714
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	546, 549, 626
FokI	GGATG	2 cut(s)	25, 153
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	546, 549, 626
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	3 cut(s)	546, 549, 626
HaeII	RGCGCY	1 cut(s)	626
HaeIII	GGCC	5 cut(s)	46, 282, 342, 535, 746
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	6 cut(s)	149, 170, 194, 442, 660, 718
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	2 cut(s)	353, 758
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	274, 290
Hpy188I	TCNGA	7 cut(s)	96, 224, 366, 432, 588, 704, 763
Hpy188III	TCNNGA	4 cut(s)	446, 458, 694, 793
Hpy8I	GTNNAC	2 cut(s)	274, 290
HpyAV	CCTTC	5 cut(s)	131, 189, 322, 512, 736
HpyCH4III	ACNGT	2 cut(s)	593, 768
HpyCH4V	TGCA	4 cut(s)	166, 628, 656, 660
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 554, 563, 634
HpyF3I	CTNAG	3 cut(s)	127, 585, 794
Hsp92II	CATG	6 cut(s)	149, 170, 194, 442, 660, 718
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	3 cut(s)	532, 535, 612
LweI	GCATC	2 cut(s)	57, 241
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	98, 122
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	2 cut(s)	18, 58
MboI	GATC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	76, 362, 426
MhlI	GDGCHC	1 cut(s)	509
MlsI	TGGCCA	2 cut(s)	342, 535
MluCI	AATT	2 cut(s)	231, 662
MluNI	TGGCCA	2 cut(s)	342, 535
MmeI	TCCRAC	2 cut(s)	247, 327
MnlI	CCTC	8 cut(s)	21, 73, 102, 287, 426, 465, 556, 787
Mox20I	TGGCCA	2 cut(s)	342, 535
Mph1103I	ATGCAT	1 cut(s)	658
MscI	TGGCCA	2 cut(s)	342, 535
MseI	TTAA	5 cut(s)	23, 230, 306, 381, 600
MslI	CAYNNNNRTG	2 cut(s)	171, 642
Msp20I	TGGCCA	2 cut(s)	342, 535
MspR9I	CCNGG	3 cut(s)	284, 336, 402
MvaI	CCWGG	3 cut(s)	284, 336, 402
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 554, 563, 634
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	6 cut(s)	149, 170, 194, 442, 660, 718
NlaIV	GGNNCC	2 cut(s)	333, 747
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	2 cut(s)	660, 718
PaeI	GCATGC	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	353, 758
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	547, 550, 627
Psp124BI	GAGCTC	1 cut(s)	509
Psp6I	CCWGG	3 cut(s)	282, 334, 400
PspGI	CCWGG	3 cut(s)	282, 334, 400
PspN4I	GGNNCC	2 cut(s)	333, 747
PspPI	GGNCC	2 cut(s)	274, 745
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	171, 642
SacI	GAGCTC	1 cut(s)	509
SaqAI	TTAA	5 cut(s)	23, 230, 306, 381, 600
SatI	GCNGC	3 cut(s)	546, 549, 626
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	274, 745
ScrFI	CCNGG	3 cut(s)	284, 336, 402
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	2 cut(s)	57, 241
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	171, 642
SmlI	CTYRAG	2 cut(s)	71, 458
SmoI	CTYRAG	2 cut(s)	71, 458
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	2 cut(s)	231, 662
SsiI	CCGC	2 cut(s)	18, 58
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	258
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	3 cut(s)	282, 334, 400
TaaI	ACNGT	2 cut(s)	593, 768
TasI	AATT	2 cut(s)	231, 662
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	353, 758
Tru1I	TTAA	5 cut(s)	23, 230, 306, 381, 600
Tru9I	TTAA	5 cut(s)	23, 230, 306, 381, 600
TscAI	CASTG	3 cut(s)	160, 217, 363
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	545, 548, 625
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	555, 668
TspRI	CASTG	3 cut(s)	160, 217, 363
VpaK11BI	GGWCC	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	281
XceI	RCATGY	2 cut(s)	660, 718
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.