Rh1AG099700

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
N/A
Physical Location & Seq
Forward (+)
17444473 .. 17466677
22205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG099700.1

Sequence Viewer

Length: 531 bp
ATGGCTTACCTATGCACAAGATCACTTAAACATCACAACTCTAATCCTCTTTATCTGGGGCCTCCTGATCTTTCAAACCCTATATCCTTTCTCAAGTGTTCACATCCAGTGAATTCTTCTCTGTATGTGAACACTGCTGCATGCAATGATACTAGTACTAGCAGTACTGGGGACGTGGAGGAGGGTTGCACCTTAGAGTGGATGAGTTTTGCACCTACCCGACTTTTTGTAAACATAACAGACGCGTATCTTACTAGAATGGCCCTAGACCCATCTTTCACTCACACAGACATACAAAACGCACTGGTGGATGGCTTTGAGCTTGGATTTAATCCTAATGTGGGTGTTCCATGCCAGGGCTTGGATGGTGATAATGACAGATGTTTTCCTCCAACAGTTGCAGGTTTTTGTCAATTCCTGATGGAGTGGATCAAAGGGCTTCCACAACCCCTAACTATTAGACGTTGGTTACACATGATTGGGAATACAACTACTAAGGAAAGAAGTAACCAAATAAAAACCACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

5.64

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 361
AccII CGCG 1 cut(s) 245
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 157, 166
AfiI CCNNNNNNNGG 4 cut(s) 198, 341, 356, 361
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 75
AhlI ACTAGT 1 cut(s) 152
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 1 cut(s) 437
AoxI GGCC 2 cut(s) 59, 261
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 59, 262
AsuHPI GGTGA 1 cut(s) 380
BbvI GCAGC 1 cut(s) 124
BccI CCATC 4 cut(s) 280, 305, 359, 415
BciT130I CCWGG 1 cut(s) 356
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 4 cut(s) 153, 159, 255, 266
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmcAI AGTACT 2 cut(s) 157, 166
Bme1390I CCNGG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 59, 262
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 341, 356, 361
Bse1I ACTGG 3 cut(s) 107, 172, 309
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 4 cut(s) 103, 207, 316, 370
BseLI CCNNNNNNNGG 4 cut(s) 198, 341, 356, 361
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 3 cut(s) 107, 172, 309
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 2 cut(s) 61, 263
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 4 cut(s) 198, 341, 356, 361
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 61, 263
Bsp143I GATC 3 cut(s) 20, 67, 429
BspANI GGCC 2 cut(s) 61, 263
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 3 cut(s) 107, 172, 309
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 20, 67, 429
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 193, 495
BstF5I GGATG 4 cut(s) 103, 207, 316, 370
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 3 cut(s) 23, 70, 432
BstMBI GATC 3 cut(s) 20, 67, 429
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 354
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 61, 263
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 103, 207, 316, 370
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 114, 132, 302
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 59, 262
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 156, 165
CviAII CATG 4 cut(s) 141, 351, 475, 525
CviJI RGCY 7 cut(s) 5, 61, 263, 315, 322, 360, 439
CviKI_1 RGCY 7 cut(s) 5, 61, 263, 315, 322, 360, 439
CviQI GTAC 2 cut(s) 156, 165
DdeI CTNAG 2 cut(s) 193, 495
DpnI GATC 3 cut(s) 22, 69, 431
DpnII GATC 3 cut(s) 20, 67, 429
EcoO109I RGGNCCY 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 144, 354, 478, 528
FaiI YATR 9 cut(s) 13, 83, 126, 142, 236, 293, 352, 476, 526
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 140, 350, 474, 524
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 4 cut(s) 90, 214, 323, 377
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 4 cut(s) 153, 159, 255, 266
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 61, 263
HgaI GACGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 144, 354, 478, 528
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 3 cut(s) 101, 130, 232
Hpy188III TCNNGA 2 cut(s) 65, 418
Hpy8I GTNNAC 3 cut(s) 101, 130, 232
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 2 cut(s) 174, 463
HpyCH4V TGCA 6 cut(s) 15, 140, 144, 189, 212, 401
HpyF3I CTNAG 2 cut(s) 193, 495
HpySE526I ACGT 2 cut(s) 174, 463
Hsp92II CATG 4 cut(s) 144, 354, 478, 528
Kzo9I GATC 3 cut(s) 20, 67, 429
LpnPI CCDG 9 cut(s) 41, 78, 120, 153, 290, 341, 368, 387, 431
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 4 cut(s) 153, 159, 255, 266
MaeII ACGT 2 cut(s) 174, 463
MaeIII GTNAC 2 cut(s) 468, 506
MalI GATC 3 cut(s) 22, 69, 431
MboI GATC 3 cut(s) 20, 67, 429
MboII GAAGA 1 cut(s) 108
MluCI AATT 2 cut(s) 112, 413
MluI ACGCGT 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 5 cut(s) 57, 72, 172, 175, 399
MseI TTAA 2 cut(s) 27, 330
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 245
NdeII GATC 3 cut(s) 20, 67, 429
NlaIII CATG 4 cut(s) 144, 354, 478, 528
NlaIV GGNNCC 1 cut(s) 60
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 59, 262
RsaI GTAC 2 cut(s) 157, 166
RsaNI GTAC 2 cut(s) 156, 165
SaqAI TTAA 2 cut(s) 27, 330
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 20, 67, 429
Sau96I GGNCC 2 cut(s) 59, 262
ScaI AGTACT 2 cut(s) 157, 166
ScrFI CCNGG 1 cut(s) 356
SetI ASST 7 cut(s) 12, 177, 194, 217, 324, 406, 466
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SpeI ACTAGT 1 cut(s) 152
SphI GCATGC 1 cut(s) 144
Sse9I AATT 2 cut(s) 112, 413
SspMI CTAG 4 cut(s) 153, 159, 255, 266
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 2 cut(s) 177, 466
TasI AATT 2 cut(s) 112, 413
TatI WGTACW 2 cut(s) 155, 164
Tru1I TTAA 2 cut(s) 27, 330
Tru9I TTAA 2 cut(s) 27, 330
TscAI CASTG 3 cut(s) 114, 139, 309
TseI GCWGC 1 cut(s) 137
TspRI CASTG 3 cut(s) 114, 139, 309
Van91I CCANNNNNTGG 1 cut(s) 361
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 4 cut(s) 153, 159, 255, 266
ZrmI AGTACT 2 cut(s) 157, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.