Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42755866 .. 42762690

Gene Structure 6825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCCGGCAAGGTGCTGTAGGGTCGGACAAGGAGCTGTTCAGCCTATATCTGGGCAGTGGTTGGCTTGGAGGTCGACTGATGCAGGCCATGCTAATGGCAGTTGTGCAGCATCAATGACTGGCAAAGGGATGGATTGTCGTGGGCTAGGTTTCCCAGGAGAAGAGATATTTCGTAAGGAGCCATTCTTCTATGGACATGAAAACTACGATCAGCTAGTGAAACTAGAAAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

7.68

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	35, 214
AluI	AGCT	2 cut(s)	35, 214
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	156
BfaI	CTAG	3 cut(s)	146, 215, 224
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	70, 119
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	6, 85
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	6, 85
Cfr10I	RCCGGY	1 cut(s)	4
CviAII	CATG	2 cut(s)	89, 197
CviJI	RGCY	7 cut(s)	35, 43, 65, 87, 145, 181, 214
CviKI_1	RGCY	7 cut(s)	35, 43, 65, 87, 145, 181, 214
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	92, 200
FaiI	YATR	4 cut(s)	47, 90, 192, 198
FatI	CATG	2 cut(s)	88, 196
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	146, 215, 224
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	92, 200
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	83, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	92, 200
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	32, 178
LpnPI	CCDG	6 cut(s)	18, 36, 69, 105, 141, 168
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	70, 119
MaeI	CTAG	3 cut(s)	146, 215, 224
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	173, 178
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	1 cut(s)	63
MroNI	GCCGGC	1 cut(s)	4
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	1 cut(s)	208
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	92, 200
NlaIV	GGNNCC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	73
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	14, 37, 74, 151, 216
SfaNI	GCATC	2 cut(s)	70, 119
SfcI	CTRYAG	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	93
SspMI	CTAG	3 cut(s)	146, 215, 224
StyD4I	CCNGG	1 cut(s)	154
TaqI	TCGA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	3 cut(s)	146, 215, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.