Rh1AG250600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
N/A
Physical Location & Seq
Reverse (-)
46541555 .. 46542609
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG250600.1

Sequence Viewer

Length: 504 bp
ATGGCCCCAAGCGACGTAAACCGAGACTGGACGGAACTTCCGGCCGTCATTACGGCGTCGATACTGTCACGTCTTGGAGACATTGAGTCCTTGACGGTGGCTGAGATGGTATGCAAGACATGGCGTGAAATCTGCAAAGACCCTATGCTGTGGCGCACCATCGACTTCATGAACAACCATACAAGCTTCATGTTCGGGCCGCCGTTGTGTTACTATATAGTGAAGATGTGCCGCCGTGCCATACACCGTAGCTCCGCTTCGGGACTTCAAGTTTTGGAGGAACTTGACATTTCGATGTGCAAATTCTCCAATATAGCTATACAAATAGTTGGGCTCTGCTGCCCTCTTATGAAATCATTCAAATTTAACAACCGGAACGGAAGAAGGTCTTCCAGGCAGTATTATAGGGACGAGGATGCAGTTGCTATATCAGCAACCATGCATGGTTTACTCCTCCTTGAGATCCGTAGGAATGAGCTGACTTGCAATGGCTTGGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

8.45

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 56 1.5e-11 F-box-like
F-box PF00646 10 - 52 2.9e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 200, 232, 255
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 2 cut(s) 302, 362
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 269, 361
AhdI GACNNNNNGTC 1 cut(s) 85
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 4 cut(s) 186, 252, 317, 478
AluI AGCT 4 cut(s) 186, 252, 317, 478
Alw26I GTCTC 2 cut(s) 18, 72
AlwI GGATC 1 cut(s) 457
AoxI GGCC 3 cut(s) 3, 42, 197
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 2 cut(s) 302, 362
Asp700I GAANNNNTTC 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 4, 197
BanII GRGCYC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 241, 273
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 326
BccI CCATC 2 cut(s) 100, 167
BceAI ACGGC 4 cut(s) 29, 69, 187, 219
BciT130I CCWGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 18, 72
BisI GCNGC 3 cut(s) 200, 232, 340
BlsI GCNGC 3 cut(s) 201, 233, 341
Bme1390I CCNGG 1 cut(s) 394
BmeRI GACNNNNNGTC 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 4, 197
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 443
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 5, 44, 199
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 41, 373
BslFI GGGAC 2 cut(s) 276, 422
BsmAI GTCTC 2 cut(s) 18, 72
BsmFI GGGAC 2 cut(s) 276, 422
BsnI GGCC 3 cut(s) 5, 44, 199
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 462
BspACI CCGC 3 cut(s) 200, 232, 255
BspANI GGCC 3 cut(s) 5, 44, 199
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 493
BsrI ACTGG 1 cut(s) 32
BssMI GATC 1 cut(s) 462
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 66, 97, 248
BstACI GRCGYC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 465
BstMAI GTCTC 2 cut(s) 18, 72
BstMBI GATC 1 cut(s) 462
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 3 cut(s) 5, 44, 199
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 421
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 4, 197
CseI GACGC 1 cut(s) 45
CviAII CATG 5 cut(s) 120, 169, 190, 439, 443
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 464
DpnII GATC 1 cut(s) 462
DriI GACNNNNNGTC 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 5 cut(s) 123, 172, 193, 442, 446
FalI AAGNNNNNCTT 2 cut(s) 373, 405
FaqI GGGAC 2 cut(s) 276, 422
FatI CATG 5 cut(s) 119, 168, 189, 438, 442
Fnu4HI GCNGC 3 cut(s) 200, 232, 340
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 200, 232, 340
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 200, 232, 340
HaeIII GGCC 3 cut(s) 5, 44, 199
HapII CCGG 2 cut(s) 41, 373
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 5 cut(s) 123, 172, 193, 442, 446
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 41, 373
Hpy166II GTNNAC 2 cut(s) 19, 449
Hpy188III TCNNGA 2 cut(s) 169, 261
Hpy8I GTNNAC 2 cut(s) 19, 449
Hpy99I CGWCG 2 cut(s) 17, 61
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 3 cut(s) 66, 97, 248
HpyCH4IV ACGT 2 cut(s) 15, 70
HpyCH4V TGCA 6 cut(s) 114, 135, 300, 419, 442, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 15, 70
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 5 cut(s) 123, 172, 193, 442, 446
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 462
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 13, 54, 379, 386, 406
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 406
MaeII ACGT 2 cut(s) 15, 70
MaeIII GTNAC 2 cut(s) 66, 209
MalI GATC 1 cut(s) 464
MboI GATC 1 cut(s) 462
MboII GAAGA 3 cut(s) 235, 381, 393
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 302, 362, 499
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 4 cut(s) 271, 354, 406, 464
Mph1103I ATGCAT 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 356, 388
MseI TTAA 2 cut(s) 366, 502
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 41, 373
MspR9I CCNGG 1 cut(s) 394
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 431
NdeII GATC 1 cut(s) 462
NlaIII CATG 5 cut(s) 123, 172, 193, 442, 446
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 444
PagI TCATGA 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 356, 388
PkrI GCNGC 3 cut(s) 201, 233, 341
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 197
PsuI RGATCY 1 cut(s) 462
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 366, 502
SatI GCNGC 3 cut(s) 200, 232, 340
Sau3AI GATC 1 cut(s) 462
Sau96I GGNCC 2 cut(s) 4, 197
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 1 cut(s) 336
SetI ASST 7 cut(s) 18, 73, 188, 254, 319, 389, 480
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 3 cut(s) 302, 362, 499
SsiI CCGC 3 cut(s) 200, 232, 255
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 66, 97, 248
TaiI ACGT 2 cut(s) 18, 73
TaqI TCGA 3 cut(s) 59, 162, 293
TasI AATT 3 cut(s) 302, 362, 499
TauI GCSGC 2 cut(s) 202, 234
Tru1I TTAA 2 cut(s) 366, 502
Tru9I TTAA 2 cut(s) 366, 502
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 4 cut(s) 157, 178, 185, 365
TspGWI ACGGA 3 cut(s) 47, 393, 455
XapI RAATTY 2 cut(s) 302, 362
XmnI GAANNNNTTC 2 cut(s) 356, 388
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.