Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

52503195 .. 52507654

Gene Structure 4460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCAAGCAAAACTAAGATCTACATTGTTCTCGAGTTTGTTGATGGGGGTGAGCTCTTTGACGAAATAGCCAAAAATGGGAGACTGAAAGAGGACGATGCCAGGAGATACTTCCAGCAGCTCATTAATGCCGTGGATTACTGTCATAGTAGAGGCGTGTACCATAGGGATTTAAAGCCAGAAAATCTTCTCTTAGATTCATACGGTGTCCTTAAAATATCAGATTTTGGATTGAGTACATTTGAACAAAAAGTGCGGGAAGATGGGCTGCTTCATACTGCCTGTGGGACTCCAAATTATGTTGCTCCTGAGGTTCTCAATAATAAAGGATACGAGGGTACATCATCTGATGTTTGGTCTTGCGGGGTGATCCTCTTTGTACTTATGGGTGGTTACCTGCCTTTTGATGAACCAAATCTCATAGCTCTGTACCGAAAAATATGCAAAGCTGAATTTTCATGTCCATCATGGTTTTCATCCGGTGCAAAGAAACTGATACACCGTATACTTGATCCAAACCCTGCTACGAGGATGACAATTCCCGAGATATTAGAAAATGAATGGTTTAAGAAAGATTACAAGCCAGCACAGTTTCAAGAAGAAGACAATGTAAATCTTGATGATGTGGATGCTGTTTTCAACAAATCAAAGGAAAATCTTGTAACAGAAAGGAAAGAGAAACCTACATCAATGAATGCTTTTGAACTTATTTCGAGGTCACAGAGTTTCAATCTAGAAAATTTATTTGAGAAGCAGATGGGTCATGTGAAACGAGAAACCCGTTTCACTTCTCAACGCCCTGCAAATGAAATCATGAGTAAGATTGAGGCGACTGCAAAGCCTTTGGGCTTTAATGTTCACAAGAAAAACTACAAGATGAAGTTGCAAGGTGATAAGCATGGAAGGAAGGGTCACCTCTCTGTAGCCACTGAGGTACAGACTTGGCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

317

Amino Acids

36.37

Weight (kDa)

7.12

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 189	4.5e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 185	3.1e-24	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	31 - 138	4.5e-07	Kinase-like
NAF	PF03822	228 - 288	1.1e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	505
AciI	CCGC	2 cut(s)	256, 363
AclWI	GGATC	2 cut(s)	364, 506
AcsI	RAATTY	2 cut(s)	452, 739
AfaI	GTAC	6 cut(s)	161, 238, 340, 381, 431, 936
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	245, 596, 640, 704, 730
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	4 cut(s)	55, 121, 425, 449
AluI	AGCT	4 cut(s)	55, 121, 425, 449
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	364, 506
Ama87I	CYCGRG	2 cut(s)	32, 542
ApeKI	GCWGC	2 cut(s)	118, 268
ApoI	RAATTY	2 cut(s)	452, 739
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	186
AsuHPI	GGTGA	4 cut(s)	62, 379, 902, 905
AvaI	CYCGRG	2 cut(s)	32, 542
AxyI	CCTNAGG	1 cut(s)	309
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	130, 255
BccI	CCATC	4 cut(s)	38, 257, 472, 751
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	423, 457
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	734
BfmI	CTRYAG	1 cut(s)	921
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	119, 269
BlsI	GCNGC	2 cut(s)	120, 270
Bme1390I	CCNGG	1 cut(s)	103
BmeT110I	CYCGRG	2 cut(s)	32, 542
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	88, 619
BpiI	GAAGAC	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse21I	CCTNAGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	3 cut(s)	476, 537, 634
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	300, 921
BseXI	GCAGC	2 cut(s)	130, 255
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	2 cut(s)	32, 542
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	700
BsoBI	CYCGRG	2 cut(s)	32, 542
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	18, 369, 511
BspACI	CCGC	2 cut(s)	256, 363
BspCNI	CTCAG	2 cut(s)	301, 922
BspHI	TCATGA	1 cut(s)	813
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	364, 506
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	3 cut(s)	18, 369, 511
BssNAI	GTATAC	1 cut(s)	506
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	4 cut(s)	143, 206, 503, 591
BstC8I	GCNNGC	2 cut(s)	7, 585
BstDEI	CTNAG	4 cut(s)	15, 193, 309, 930
BstDSI	CCRYGG	1 cut(s)	132
BstEII	GGTNACC	2 cut(s)	392, 911
BstF5I	GGATG	3 cut(s)	476, 537, 634
BstKTI	GATC	3 cut(s)	21, 372, 514
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	18, 369, 511
BstNI	CCWGG	1 cut(s)	103
BstPI	GGTNACC	2 cut(s)	392, 911
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	921
BstV1I	GCAGC	2 cut(s)	130, 255
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BstZ17I	GTATAC	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	476, 537, 634
BtsIMutI	CAGTG	1 cut(s)	927
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	7, 585
CciI	TCATGA	1 cut(s)	813
Csp6I	GTAC	6 cut(s)	160, 237, 339, 380, 430, 935
CviAII	CATG	5 cut(s)	459, 468, 764, 814, 899
CviQI	GTAC	6 cut(s)	160, 237, 339, 380, 430, 935
DdeI	CTNAG	4 cut(s)	15, 193, 309, 930
DpnI	GATC	3 cut(s)	20, 371, 513
DpnII	GATC	3 cut(s)	18, 369, 511
DraI	TTTAAA	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	32, 542
Eco91I	GGTNACC	2 cut(s)	392, 911
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	2 cut(s)	392, 911
EcoRII	CCWGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	5 cut(s)	462, 471, 767, 817, 902
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	5 cut(s)	458, 467, 763, 813, 898
FauI	CCCGC	2 cut(s)	249, 356
FauNDI	CATATG	1 cut(s)	948
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	119, 269
FokI	GGATG	3 cut(s)	463, 544, 641
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	119, 269
FspBI	CTAG	1 cut(s)	734
GluI	GCNGC	2 cut(s)	119, 269
HapII	CCGG	1 cut(s)	480
Hin1II	CATG	5 cut(s)	462, 471, 767, 817, 902
HinfI	GANTC	2 cut(s)	197, 289
HpaII	CCGG	1 cut(s)	480
HphI	GGTGA	4 cut(s)	62, 379, 902, 905
Hpy166II	GTNNAC	3 cut(s)	160, 506, 859
Hpy188I	TCNGA	2 cut(s)	223, 349
Hpy188III	TCNNGA	7 cut(s)	32, 308, 542, 596, 617, 734, 814
Hpy8I	GTNNAC	3 cut(s)	160, 506, 859
HpyAV	CCTTC	2 cut(s)	897, 901
HpyCH4III	ACNGT	4 cut(s)	143, 206, 503, 591
HpyCH4V	TGCA	5 cut(s)	444, 485, 803, 836, 886
HpyF3I	CTNAG	4 cut(s)	15, 193, 309, 930
Hsp92II	CATG	5 cut(s)	462, 471, 767, 817, 902
Kzo9I	GATC	3 cut(s)	18, 369, 511
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	130, 255
LweI	GCATC	2 cut(s)	88, 619
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	4 cut(s)	392, 661, 717, 911
MalI	GATC	3 cut(s)	20, 371, 513
MboI	GATC	3 cut(s)	18, 369, 511
MboII	GAAGA	4 cut(s)	179, 272, 611, 614
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	4 cut(s)	295, 452, 537, 739
MlyI	GAGTC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	5 cut(s)	126, 173, 213, 567, 852
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	948
NdeII	GATC	3 cut(s)	18, 369, 511
NlaIII	CATG	5 cut(s)	462, 471, 767, 817, 902
NmuCI	GTSAC	2 cut(s)	717, 911
PaeR7I	CTCGAG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	120, 270
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	101
PspEI	GGTNACC	2 cut(s)	392, 911
PspGI	CCWGG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	6 cut(s)	161, 238, 340, 381, 431, 936
RsaNI	GTAC	6 cut(s)	160, 237, 339, 380, 430, 935
SacI	GAGCTC	1 cut(s)	57
SaqAI	TTAA	5 cut(s)	126, 173, 213, 567, 852
SatI	GCNGC	2 cut(s)	119, 269
Sau3AI	GATC	3 cut(s)	18, 369, 511
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	88, 619
SfcI	CTRYAG	1 cut(s)	921
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	295, 452, 537, 739
SsiI	CCGC	2 cut(s)	256, 363
SspMI	CTAG	1 cut(s)	734
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	143, 206, 503, 591
TaqI	TCGA	2 cut(s)	33, 713
TasI	AATT	4 cut(s)	295, 452, 537, 739
TatI	WGTACW	2 cut(s)	236, 379
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	5 cut(s)	126, 173, 213, 567, 852
Tru9I	TTAA	5 cut(s)	126, 173, 213, 567, 852
TscAI	CASTG	1 cut(s)	934
TseFI	GTSAC	2 cut(s)	717, 911
TseI	GCWGC	2 cut(s)	118, 268
Tsp45I	GTSAC	2 cut(s)	717, 911
TspDTI	ATGAA	9 cut(s)	189, 263, 423, 447, 465, 573, 707, 822, 893
TspRI	CASTG	1 cut(s)	934
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	2 cut(s)	452, 739
XbaI	TCTAGA	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.