Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

52663324 .. 52663710

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGATCAAGGACCTGCAAGGAAGAAACTAATGAAGCAAACAACTCATTAATCATGAACCACAGTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCTAGCCTAGAGAGCCCAAACTCTTCTGCAGAGAATGATGACACGGTGGGTCATCAAAGCGTGGACTCGGTTGGCCTCACCAACTGGGCAGCGCTTGATCGTTTCGTGGCTGCACAACTCGATGACCGAGAAACGATGACCTACCCGGAATCAGGGAACTGCTTCAGTACTGGTCACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCATCCAGCAACGTGATCGAGCTGTGGCCTACTTTTGCTCCACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

4.7

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	274
AfeI	AGCGCT	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	304, 358
AluI	AGCT	2 cut(s)	304, 358
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	198
AoxI	GGCC	2 cut(s)	178, 362
ApeKI	GCWGC	2 cut(s)	194, 215
ApoI	RAATTY	1 cut(s)	334
AseI	ATTAAT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	175, 272
AvaII	GGWCC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	122, 306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	202, 206
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	2 cut(s)	108, 113
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	195, 216
BlsI	GCNGC	2 cut(s)	196, 217
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	194, 280
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	194, 280
BseXI	GCAGC	2 cut(s)	202, 206
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	180, 364
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	2 cut(s)	180, 364
Bsp1286I	GDGCHC	2 cut(s)	122, 306
Bsp143I	GATC	5 cut(s)	5, 202, 295, 326, 351
BspANI	GGCC	2 cut(s)	180, 364
BspCNI	CTCAG	1 cut(s)	315
BspHI	TCATGA	4 cut(s)	54, 76, 292, 298
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	194, 280
BssMI	GATC	5 cut(s)	5, 202, 295, 326, 351
Bst4CI	ACNGT	2 cut(s)	65, 151
Bst6I	CTCTTC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	338
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	5 cut(s)	8, 205, 298, 329, 354
BstMBI	GATC	5 cut(s)	5, 202, 295, 326, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	202, 206
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	180, 364
BtsCI	GGATG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	23
CciI	TCATGA	4 cut(s)	54, 76, 292, 298
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	6 cut(s)	55, 68, 77, 284, 293, 299
CviJI	RGCY	7 cut(s)	111, 120, 180, 215, 304, 358, 364
CviKI_1	RGCY	7 cut(s)	111, 120, 180, 215, 304, 358, 364
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	5 cut(s)	7, 204, 297, 328, 353
DpnII	GATC	5 cut(s)	5, 202, 295, 326, 351
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	122, 306
Eco47I	GGWCC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	122, 306
FaeI	CATG	6 cut(s)	58, 71, 80, 287, 296, 302
FaiI	YATR	7 cut(s)	56, 69, 78, 285, 294, 300, 381
FatI	CATG	6 cut(s)	54, 67, 76, 283, 292, 298
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	195, 216
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	2 cut(s)	122, 306
Fsp4HI	GCNGC	2 cut(s)	195, 216
FspBI	CTAG	2 cut(s)	108, 113
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	195, 216
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	180, 364
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	6 cut(s)	58, 71, 80, 287, 296, 302
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	100, 170, 254
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	175, 272
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	5 cut(s)	55, 77, 97, 293, 299
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	65, 151
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	18, 134, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	6 cut(s)	58, 71, 80, 287, 296, 302
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	5, 202, 295, 326, 351
LmnI	GCTCC	2 cut(s)	309, 379
LpnPI	CCDG	6 cut(s)	28, 175, 243, 261, 264, 355
Lsp1109I	GCAGC	2 cut(s)	202, 206
MaeI	CTAG	2 cut(s)	108, 113
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	5 cut(s)	7, 204, 297, 328, 353
MboI	GATC	5 cut(s)	5, 202, 295, 326, 351
MboII	GAAGA	3 cut(s)	35, 95, 120
MhlI	GDGCHC	2 cut(s)	122, 306
MluCI	AATT	2 cut(s)	308, 334
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	4 cut(s)	66, 81, 297, 382
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	5 cut(s)	5, 202, 295, 326, 351
NlaIII	CATG	6 cut(s)	58, 71, 80, 287, 296, 302
NmuCI	GTSAC	1 cut(s)	278
PagI	TCATGA	4 cut(s)	54, 76, 292, 298
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	100, 254
PkrI	GCNGC	2 cut(s)	196, 217
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	12
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	4 cut(s)	66, 81, 297, 382
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	195, 216
Sau3AI	GATC	5 cut(s)	5, 202, 295, 326, 351
Sau96I	GGNCC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	122, 306
SetI	ASST	6 cut(s)	17, 95, 248, 306, 351, 360
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	4 cut(s)	66, 81, 297, 382
Sse9I	AATT	2 cut(s)	308, 334
SspMI	CTAG	2 cut(s)	108, 113
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	65, 151
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	225, 332, 354
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	308, 334
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	100, 254
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	194, 215
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	48, 65, 71, 327
VpaK11BI	GGWCC	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	50
XapI	RAATTY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	108, 113
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.