Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56813939 .. 56815083

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG333400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGTTATTCAAATGGGATGTTATTGATCTGCATTCTCTTTGTTTCATCAATGCCATGTATTCTCTATGCTTCTTTTAATCCACAAGACAGATTTTTTATTGATTGTGGGGGGAACAATGCACTGGTTCTTGATGATGGCCGTGTTTTTGAGCCGGAATCTGGGAACCCACATGTTACTTTGTCTTCGCATACCCACAATGCAGTTTCGGTGGTTGATGAAATGCCTTTGTCAAAGTCAAACCACTCAGTTCTGTTTAACTCTGCCCAGGTTTTTAGAGAAACTTCATCTTATAGCTTTAGCACTAAGCAGATAGGTCGCCATTGGATAAGATTGCATTTCTACCCAATTCGGAACCCACATTTCAACTTGAAATCTGCAGTCTTTTCTGTAGTGGCTAATGGAATCACACTGCTTCATGGGTTTTCATTTTCGAAAGTAGGTAAAGTCTCTAGGCTTGTTAAGGAGTATGTAGTTGAAGTGGATGGAACAAGTTCCAAGAAATTGTTGCTGACATTTTCACCTTGGAATGGTTCGGTTGCGTTCATCAATGCGGTAGAGGTGGTTTCGGTGCCAAGTGAGCAATTCCCTAGTACCAATACAATGGCGGTTCCATTAGAGCCTGGTATTGAGATTCCTAGTCATGTTGCTTTTGAGACAGCGTATAGGATCAACATGGGAGGTCCACATATAACCCCCAAGAATGACACATTGTGGAGGACATGGGAACCAGATCAGGCTTTTCTTGTCAATGCTGCATCTGCGAGAAATGTCACAGCCAATCCACGCTCAATCAAATACCCTGATGGAGTGTCGGTCGAAATTGCCCCGGATTGGGTTTATGCCACAGCTCAGGAAATGGCAGATGCAAATGTGTTGAATCAGAAATTCAACATATCATGGGCATTTAAAGTTGAAAATGGCTTCAGTTATCTTATTAGGCTGCATTTCTGTGACATTGACAATGGCATTGTCAGCGGCTTACTTCATAGACTTTGTGACAAATGTATCAATGGGATCAGACCAGATATTGGTTCAGATTGGTCCTCCCATGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

353

Amino Acids

39.15

Weight (kDa)

6.34

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	76 - 322	9.5e-15	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	1031
AciI	CCGC	3 cut(s)	554, 608, 978
AclWI	GGATC	2 cut(s)	677, 1025
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	887
AcuI	CTGAAG	1 cut(s)	910
AdeI	CACNNNGTG	1 cut(s)	714
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	5 cut(s)	161, 530, 834, 835, 1031
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	7 cut(s)	12, 367, 373, 479, 880, 892, 917
AjnI	CCWGG	2 cut(s)	267, 622
AluBI	AGCT	2 cut(s)	297, 851
AluI	AGCT	2 cut(s)	297, 851
Alw26I	GTCTC	2 cut(s)	454, 650
AlwI	GGATC	2 cut(s)	677, 1025
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	755, 943
ApoI	RAATTY	1 cut(s)	887
Asp700I	GAANNNNTTC	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	683, 1044
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	513
AsuII	TTCGAA	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	683, 1044
BaeI	ACNNNNGTAYC	2 cut(s)	991, 1024
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	742, 930
BccI	CCATC	3 cut(s)	131, 479, 800
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	2 cut(s)	269, 624
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	2 cut(s)	454, 650
BfaI	CTAG	3 cut(s)	453, 591, 639
BfmI	CTRYAG	2 cut(s)	378, 390
BisI	GCNGC	3 cut(s)	756, 944, 979
BlsI	GCNGC	3 cut(s)	757, 945, 980
Bme1390I	CCNGG	3 cut(s)	269, 624, 830
Bme18I	GGWCC	2 cut(s)	683, 1044
BmgT120I	GGNCC	2 cut(s)	683, 1044
BmiI	GGNNCC	5 cut(s)	167, 356, 573, 612, 729
BmrFI	CCNGG	3 cut(s)	269, 624, 830
BmsI	GCATC	2 cut(s)	767, 856
BpiI	GAAGAC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu14I	TTCGAA	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	267, 524, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 530, 834, 835, 1031
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	269, 624
BseDI	CCNNGG	3 cut(s)	267, 524, 828
BseGI	GGATG	2 cut(s)	24, 490
BseLI	CCNNNNNNNGG	5 cut(s)	161, 530, 834, 835, 1031
BseMII	CTCAG	2 cut(s)	261, 866
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	742, 930
Bsh1285I	CGRYCG	1 cut(s)	819
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	155, 830
BslI	CCNNNNNNNGG	5 cut(s)	161, 530, 834, 835, 1031
BsmAI	GTCTC	2 cut(s)	454, 650
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	27, 669, 733, 1017
BspACI	CCGC	3 cut(s)	554, 608, 978
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	260, 865
BspLI	GGNNCC	5 cut(s)	167, 356, 573, 612, 729
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	2 cut(s)	677, 1025
BspT104I	TTCGAA	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	3 cut(s)	267, 524, 828
BssMI	GATC	4 cut(s)	27, 669, 733, 1017
BssT1I	CCWWGG	1 cut(s)	524
Bst2UI	CCWGG	2 cut(s)	269, 624
BstBI	TTCGAA	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	247, 306, 852
BstF5I	GGATG	2 cut(s)	24, 490
BstKTI	GATC	4 cut(s)	30, 672, 736, 1020
BstMAI	GTCTC	2 cut(s)	454, 650
BstMBI	GATC	4 cut(s)	27, 669, 733, 1017
BstMCI	CGRYCG	1 cut(s)	819
BstMWI	GCNNNNNNNGC	3 cut(s)	580, 761, 975
BstNI	CCWGG	2 cut(s)	269, 624
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	267, 622, 828
BstSFI	CTRYAG	2 cut(s)	378, 390
BstV1I	GCAGC	2 cut(s)	742, 930
BstV2I	GAAGAC	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	24, 490
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	122, 410
Cfr13I	GGNCC	2 cut(s)	683, 1044
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	8 cut(s)	57, 173, 419, 644, 676, 723, 900, 1052
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	3 cut(s)	247, 306, 852
DpnI	GATC	4 cut(s)	29, 671, 735, 1019
DpnII	GATC	4 cut(s)	27, 669, 733, 1017
DraI	TTTAAA	1 cut(s)	910
DraIII	CACNNNGTG	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	683, 1044
Eco57I	CTGAAG	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	267, 622
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	8 cut(s)	60, 176, 422, 647, 679, 726, 903, 1055
FatI	CATG	8 cut(s)	56, 172, 418, 643, 675, 722, 899, 1051
Fnu4HI	GCNGC	3 cut(s)	756, 944, 979
FokI	GGATG	2 cut(s)	31, 497
Fsp4HI	GCNGC	3 cut(s)	756, 944, 979
FspBI	CTAG	3 cut(s)	453, 591, 639
GluI	GCNGC	3 cut(s)	756, 944, 979
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	155, 830
Hin1II	CATG	8 cut(s)	60, 176, 422, 647, 679, 726, 903, 1055
HinfI	GANTC	4 cut(s)	158, 405, 634, 880
HpaII	CCGG	2 cut(s)	155, 830
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	686
Hpy188I	TCNGA	4 cut(s)	354, 885, 1022, 1039
Hpy188III	TCNNGA	2 cut(s)	131, 854
Hpy8I	GTNNAC	1 cut(s)	686
HpyCH4V	TGCA	8 cut(s)	33, 122, 203, 337, 380, 758, 869, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	580, 761, 975
HpyF3I	CTNAG	3 cut(s)	247, 306, 852
Hsp92II	CATG	8 cut(s)	60, 176, 422, 647, 679, 726, 903, 1055
Kzo9I	GATC	4 cut(s)	27, 669, 733, 1017
Lsp1109I	GCAGC	2 cut(s)	742, 930
LweI	GCATC	2 cut(s)	767, 856
MaeI	CTAG	3 cut(s)	453, 591, 639
MaeIII	GTNAC	4 cut(s)	175, 772, 953, 998
MalI	GATC	4 cut(s)	29, 671, 735, 1019
MboI	GATC	4 cut(s)	27, 669, 733, 1017
MboII	GAAGA	1 cut(s)	177
MluCI	AATT	5 cut(s)	348, 503, 584, 822, 887
MnlI	CCTC	4 cut(s)	553, 674, 711, 1057
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	4 cut(s)	78, 258, 462, 909
MslI	CAYNNNNRTG	1 cut(s)	951
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	2 cut(s)	155, 830
MspR9I	CCNGG	3 cut(s)	269, 624, 830
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	2 cut(s)	269, 624
MwoI	GCNNNNNNNGC	3 cut(s)	580, 761, 975
NciI	CCSGG	1 cut(s)	830
NdeII	GATC	4 cut(s)	27, 669, 733, 1017
NlaIII	CATG	8 cut(s)	60, 176, 422, 647, 679, 726, 903, 1055
NlaIV	GGNNCC	5 cut(s)	167, 356, 573, 612, 729
NmuCI	GTSAC	3 cut(s)	772, 953, 998
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	434
PciI	ACATGT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	158, 405, 634, 880
PflMI	CCANNNNNTGG	1 cut(s)	1031
PkrI	GCNGC	3 cut(s)	757, 945, 980
PscI	ACATGT	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	267, 622
PspGI	CCWGG	2 cut(s)	267, 622
PspN4I	GGNNCC	5 cut(s)	167, 356, 573, 612, 729
PspPI	GGNCC	2 cut(s)	683, 1044
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
RseI	CAYNNNNRTG	1 cut(s)	951
SaqAI	TTAA	4 cut(s)	78, 258, 462, 909
SatI	GCNGC	3 cut(s)	756, 944, 979
Sau3AI	GATC	4 cut(s)	27, 669, 733, 1017
Sau96I	GGNCC	2 cut(s)	683, 1044
ScrFI	CCNGG	3 cut(s)	269, 624, 830
SetI	ASST	8 cut(s)	273, 299, 319, 445, 526, 564, 685, 853
SfaNI	GCATC	2 cut(s)	767, 856
SfcI	CTRYAG	2 cut(s)	378, 390
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	2 cut(s)	683, 1044
SmiMI	CAYNNNNRTG	1 cut(s)	951
Sse9I	AATT	5 cut(s)	348, 503, 584, 822, 887
SsiI	CCGC	3 cut(s)	554, 608, 978
SspMI	CTAG	3 cut(s)	453, 591, 639
StyD4I	CCNGG	3 cut(s)	267, 622, 828
StyI	CCWWGG	1 cut(s)	524
TaqI	TCGA	2 cut(s)	434, 819
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	5 cut(s)	348, 503, 584, 822, 887
TauI	GCSGC	1 cut(s)	981
TfiI	GAWTC	4 cut(s)	158, 405, 634, 880
Tru1I	TTAA	4 cut(s)	78, 258, 462, 909
Tru9I	TTAA	4 cut(s)	78, 258, 462, 909
TscAI	CASTG	2 cut(s)	129, 417
TseFI	GTSAC	3 cut(s)	772, 953, 998
TseI	GCWGC	2 cut(s)	755, 943
Tsp45I	GTSAC	3 cut(s)	772, 953, 998
TspDTI	ATGAA	7 cut(s)	36, 234, 276, 407, 417, 535, 977
TspRI	CASTG	2 cut(s)	129, 417
Van91I	CCANNNNNTGG	1 cut(s)	1031
VpaK11BI	GGWCC	2 cut(s)	683, 1044
XapI	RAATTY	1 cut(s)	887
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	3 cut(s)	453, 591, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.