Rh1AG342800

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
N/A
Physical Location & Seq
Forward (+)
57915681 .. 57918422
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG342800.1

Sequence Viewer

Length: 696 bp
ATGAGCGGTGGGATTCGTACAAGCGTGAAGGGGTTCCTTAATGCAAAACGCCTGGCTTTGTCTGCGGAAATAGATACAGTGCATGAGACGAATGAGACCATCACTCGCAATTTCAGTGCACTTCAAGCTGCTGCTGATTCTGTGGATGAGAAGACAGCACAAGAGAAGAGCATTGCTTCAACTTCGCTCAGTATCTATGACGTGCCTTCATCTCCTTGGACACAGAATGAGATCTTGCCAAGAAGATTCTTCTATAATGAACTGAAAACAGCAACCTGGAACTTTCATCCTGTTAATATGGTGGGTGAAGGTTGTTATGGTCGTGTTTTCAAGGGGTGGATTGATGATAATACATCAACATCTGCCAAACCCGGTACTGGCATGTTAATTGCCGTGAAGACAATTAACCGAGAAGGTTTACAGGGTCACAAGGAATGGTTGTATTCTGTGGCTGCAGCTCGTAAAGCGGCTAACCTTGCAAATCAATGCTTATCAGCAGAACCCGAGTTGAGGCCAAACATGAATGAGGTGGTAAAAGAATTAGAGCAGCTTCAGGAATCAGTTGACATTGAGGGCGCAGGAATCTCTCATAACGAGCCTCGCCAATCTCCTTATTCCAATTCAAGCTGTGAAAAATTAAGCTGGAGAAGTTGGATCAGCTTCAGGTCCTCTGCTTCTCTCAGCTACATAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

6.45

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 65, 467
AclWI GGATC 1 cut(s) 662
AcuI CTGAAG 2 cut(s) 536, 646
AfaI GTAC 2 cut(s) 19, 376
AfiI CCNNNNNNNGG 2 cut(s) 377, 510
AgsI TTSAA 4 cut(s) 125, 180, 331, 624
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 51, 275
AluBI AGCT 7 cut(s) 128, 458, 550, 627, 642, 660, 684
AluI AGCT 7 cut(s) 128, 458, 550, 627, 642, 660, 684
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 80, 89
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 1 cut(s) 512
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 5 cut(s) 128, 131, 452, 455, 547
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 666
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 158, 404
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 5 cut(s) 115, 118, 439, 467, 559
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 2 cut(s) 53, 277
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 80, 89
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 231
BisI GCNGC 6 cut(s) 129, 132, 453, 456, 468, 548
BlsI GCNGC 6 cut(s) 130, 133, 454, 457, 469, 549
Bme1390I CCNGG 3 cut(s) 53, 277, 372
Bme18I GGWCC 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 3 cut(s) 53, 277, 372
BpiI GAAGAC 2 cut(s) 158, 404
BpmI CTGGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 510
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 53, 277
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 151, 286
BseLI CCNNNNNNNGG 2 cut(s) 377, 510
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 202, 694
BseNI ACTGG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 5 cut(s) 115, 118, 439, 467, 559
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 377, 510
BsmAI GTCTC 2 cut(s) 80, 89
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 514
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 231, 654
BspACI CCGC 3 cut(s) 6, 65, 467
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 2 cut(s) 201, 693
BspLI GGNNCC 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 2 cut(s) 231, 654
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 53, 277
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 188, 680
BstF5I GGATG 2 cut(s) 151, 286
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 2 cut(s) 234, 657
BstMAI GTCTC 2 cut(s) 80, 89
BstMBI GATC 2 cut(s) 231, 654
BstMWI GCNNNNNNNGC 4 cut(s) 62, 125, 464, 476
BstNI CCWGG 2 cut(s) 53, 277
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 51, 275, 370
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 5 cut(s) 115, 118, 439, 467, 559
BstV2I GAAGAC 2 cut(s) 158, 404
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 514
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 151, 286
BtsIMutI CAGTG 2 cut(s) 84, 121
CfoI GCGC 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 666
Csp6I GTAC 2 cut(s) 18, 375
CviAII CATG 3 cut(s) 83, 382, 520
CviQI GTAC 2 cut(s) 18, 375
DdeI CTNAG 2 cut(s) 188, 680
DpnI GATC 2 cut(s) 233, 656
DpnII GATC 2 cut(s) 231, 654
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 536, 646
Eco88I CYCGRG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 51, 275
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 3 cut(s) 86, 385, 523
FaiI YATR 9 cut(s) 84, 198, 255, 299, 318, 383, 521, 591, 689
FatI CATG 3 cut(s) 82, 381, 519
Fnu4HI GCNGC 6 cut(s) 129, 132, 453, 456, 468, 548
FokI GGATG 2 cut(s) 158, 273
Fsp4HI GCNGC 6 cut(s) 129, 132, 453, 456, 468, 548
GlaI GCGC 1 cut(s) 577
GluI GCNGC 6 cut(s) 129, 132, 453, 456, 468, 548
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 1 cut(s) 514
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 578
Hin1II CATG 3 cut(s) 86, 385, 523
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 5 cut(s) 13, 137, 246, 557, 582
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 119, 419, 565
Hpy188III TCNNGA 1 cut(s) 554
Hpy8I GTNNAC 3 cut(s) 119, 419, 565
HpyAV CCTTC 4 cut(s) 22, 216, 302, 407
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 44, 82, 119, 455, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 125, 464, 476
HpyF3I CTNAG 2 cut(s) 188, 680
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 86, 385, 523
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 2 cut(s) 231, 654
LguI GCTCTTC 1 cut(s) 161
Lsp1109I GCAGC 5 cut(s) 115, 118, 439, 467, 559
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 425
MalI GATC 2 cut(s) 233, 656
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 231, 654
MboII GAAGA 5 cut(s) 163, 178, 241, 255, 409
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 6 cut(s) 109, 387, 402, 539, 619, 635
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 5 cut(s) 504, 520, 565, 609, 679
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 5 cut(s) 39, 294, 386, 405, 638
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 53, 277, 372
MvaI CCWGG 2 cut(s) 53, 277
MwoI GCNNNNNNNGC 4 cut(s) 62, 125, 464, 476
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 231, 654
NlaIII CATG 3 cut(s) 86, 385, 523
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 425
NspI RCATGY 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 5 cut(s) 13, 137, 246, 557, 582
PkrI GCNGC 6 cut(s) 130, 133, 454, 457, 469, 549
PpuMI RGGWCCY 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 51, 275
PspGI CCWGG 2 cut(s) 51, 275
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 666
PspPPI RGGWCCY 1 cut(s) 666
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 19, 376
RsaNI GTAC 2 cut(s) 18, 375
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 5 cut(s) 39, 294, 386, 405, 638
SatI GCNGC 6 cut(s) 129, 132, 453, 456, 468, 548
Sau3AI GATC 2 cut(s) 231, 654
Sau96I GGNCC 1 cut(s) 666
ScrFI CCNGG 3 cut(s) 53, 277, 372
SduI GDGCHC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 666
Sse9I AATT 6 cut(s) 109, 387, 402, 539, 619, 635
SsiI CCGC 3 cut(s) 6, 65, 467
StyD4I CCNGG 3 cut(s) 51, 275, 370
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 204
TasI AATT 6 cut(s) 109, 387, 402, 539, 619, 635
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 5 cut(s) 13, 137, 246, 557, 582
Tru1I TTAA 5 cut(s) 39, 294, 386, 405, 638
Tru9I TTAA 5 cut(s) 39, 294, 386, 405, 638
TscAI CASTG 2 cut(s) 84, 121
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 5 cut(s) 128, 131, 452, 455, 547
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 198, 273, 275, 536
TspRI CASTG 2 cut(s) 84, 121
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 666
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.