Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

61102056 .. 61102559

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG379100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATGAGCATATGGCCATGGAATCCTTGCTATTCGACTGTGGCGCCATTCGAGGTAGTCTTTCCAACGCAAAAAGCATAGCAGTGAGAAAGCTTTCAATAAAGTATGTGAAAGAGAGTGTGGAAATTAAGAAAGAGGTTTTGTTAATGGCTATGCTTCAACATCCAAATCTAATTGAGCTCCTAGGGTGTGCCTTGGAAGAAAATTCTGAAAGGCTTCTTGTCTATGAGCTTTTCCCTAACGCAACTCTTGATCGCATCATATTTGGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

5.31

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	22 - 87	8.2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	99, 161
AluBI	AGCT	3 cut(s)	94, 181, 232
AluI	AGCT	3 cut(s)	94, 181, 232
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	2 cut(s)	94, 216
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	47
AvrII	CCTAGG	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	185, 274
BfoI	RGCGCY	1 cut(s)	48
BlnI	CCTAGG	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	18, 184, 195
BseDI	CCNNGG	3 cut(s)	18, 184, 195
BseGI	GGATG	2 cut(s)	10, 163
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	18, 184, 195
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	3 cut(s)	18, 184, 195
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	10, 163
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	10, 163
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	17, 94, 152, 181, 217, 232
CviKI_1	RGCY	6 cut(s)	17, 94, 152, 181, 217, 232
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	3 cut(s)	18, 184, 195
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	181
EcoT14I	CCWWGG	3 cut(s)	18, 184, 195
EcoT38I	GRGCYC	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	18, 184, 195
FaeI	CATG	1 cut(s)	22
FaiI	YATR	8 cut(s)	12, 14, 20, 80, 108, 155, 228, 263
FatI	CATG	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	12
FokI	GGATG	2 cut(s)	17, 150
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	185, 274
GlaI	GCGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	186
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	185, 274
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	126, 174, 205
MluNI	TGGCCA	1 cut(s)	17
Mly113I	GGCGCC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	2 cut(s)	47, 130
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	94, 216
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	2 cut(s)	129, 146
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	17
NarI	GGCGCC	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	94, 216
PfeI	GAWTC	1 cut(s)	23
PluTI	GGCGCC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	129, 146
Sau3AI	GATC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	58, 96, 141, 183, 234
SfaNI	GCATC	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	46
SgeI	CNNG	7 cut(s)	31, 40, 65, 197, 208, 233, 263
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	126, 174, 205
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	185, 274
SstI	GAGCTC	1 cut(s)	183
StyI	CCWWGG	3 cut(s)	18, 184, 195
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	36, 52
TasI	AATT	3 cut(s)	126, 174, 205
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	129, 146
Tru9I	TTAA	2 cut(s)	129, 146
TscAI	CASTG	1 cut(s)	90
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	184
XmnI	GAANNNNTTC	2 cut(s)	94, 216
XspI	CTAG	2 cut(s)	185, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.