Rh1AG412200

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
N/A
Physical Location & Seq
Reverse (-)
64516560 .. 64517295
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG412200.1

Sequence Viewer

Length: 654 bp
ATGAGGAGTACTGAATCCCTTTCTAAACAACCTAGTCAATGTAAAAATCTTGGTTATAAAGAATGTGATGGGGGCAGTAGCTCATTTACCACCTCATTTATGTCCAGGAGTCAGGACATCAGCTTTGGTACCGCATCACCTAGTATATGTGAAGCCCAATCCCCTACATTCACAAGCAGGTCATCTTTTTCTCCTTTCCTGGTAGAGCCATCTACTCCTTGCTTGGCATCTGGTGGGTTGTCATTCCGTAGCAATGACGTCTCCAATTGCCTGGAATTCTCCTCCCCTATTTCCTCAATGCCAAGCTTTGCATTCTTCAGCCCCAGTTCTGTGGTTGAGGAACGTAGTTGTTCGGTGGAGTTCTCAGCCAGCATAGATGCAGTTCATCAAGAGACAAACTCAGGGAAGTTGCTCCTATTATCAGATTCCCTTGCATTTAGGCTTGAAGCTACAGGAATGATTAACAGACCAGCAGTAGCTAAAAGATCCGGGGTGACAACTGGGTCTAGGACATTGGGCATCCACAGCAAGAGGAACCGCACAATTGGACTCGGTGAGCACGAGCAACTAGATTTCATGGTCAATGAATCAATCATCCGCTGGTCATCATGCACACATCTTACCACTTCTCTACGATCTTCGCTCGTTTGTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

23.37

Weight (kDa)

6.88

Isoelectric Point (pI)

82.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AasI GACNNNNNNGTC 1 cut(s) 502
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 168
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 3 cut(s) 132, 538, 598
AclWI GGATC 1 cut(s) 480
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 10, 130
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 3 cut(s) 104, 198, 270
AluBI AGCT 5 cut(s) 81, 123, 306, 449, 479
AluI AGCT 5 cut(s) 81, 123, 306, 449, 479
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 2 cut(s) 265, 386
AlwI GGATC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp718I GGTACC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 490
AsuHPI GGTGA 3 cut(s) 129, 505, 566
BanI GGYRCC 1 cut(s) 128
BauI CACGAG 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 561
BccI CCATC 2 cut(s) 62, 217
BciT130I CCWGG 3 cut(s) 106, 200, 272
BcnI CCSGG 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 265, 386
BfaI CTAG 4 cut(s) 33, 141, 507, 569
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 168
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 4 cut(s) 106, 200, 272, 490
BmiI GGNNCC 2 cut(s) 130, 536
BmrFI CCNGG 4 cut(s) 106, 200, 272, 490
BmrI ACTGGG 2 cut(s) 318, 510
BmsI GCATC 4 cut(s) 143, 236, 367, 528
BmuI ACTGGG 2 cut(s) 318, 510
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpuMI CCSGG 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 324, 505
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 3 cut(s) 106, 200, 272
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 519, 594
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 378, 414
BseNI ACTGG 2 cut(s) 324, 505
BseRI GAGGAG 2 cut(s) 19, 271
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 1 cut(s) 489
BsmAI GTCTC 2 cut(s) 265, 386
BsmBI CGTCTC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 2 cut(s) 485, 635
BspACI CCGC 3 cut(s) 132, 538, 598
BspCNI CTCAG 2 cut(s) 377, 413
BspLI GGNNCC 2 cut(s) 130, 536
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 324, 505
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 485, 635
BssNI GRCGYC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 3 cut(s) 106, 200, 272
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 364, 400
BstF5I GGATG 2 cut(s) 519, 594
BstKTI GATC 2 cut(s) 488, 638
BstMAI GTCTC 2 cut(s) 265, 386
BstMBI GATC 2 cut(s) 485, 635
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstNI CCWGG 3 cut(s) 106, 200, 272
BstSCI CCNGG 4 cut(s) 104, 198, 270, 488
BstSFI CTRYAG 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 485
BstXI CCANNNNNNTGG 2 cut(s) 271, 331
BstYI RGATCY 1 cut(s) 485
BtsCI GGATG 2 cut(s) 519, 594
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 370
Csp6I GTAC 2 cut(s) 9, 129
CviAII CATG 2 cut(s) 577, 609
CviQI GTAC 2 cut(s) 9, 129
DdeI CTNAG 2 cut(s) 364, 400
DpnI GATC 2 cut(s) 487, 637
DpnII GATC 2 cut(s) 485, 635
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 104, 198, 270
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 2 cut(s) 580, 612
FaiI YATR 7 cut(s) 57, 101, 146, 148, 374, 578, 610
FatI CATG 2 cut(s) 576, 608
FokI GGATG 2 cut(s) 506, 581
FspBI CTAG 4 cut(s) 33, 141, 507, 569
HapII CCGG 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 580, 612
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 5 cut(s) 14, 109, 425, 549, 587
HpaII CCGG 1 cut(s) 489
HphI GGTGA 3 cut(s) 129, 505, 566
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 113, 389
HpyCH4IV ACGT 2 cut(s) 258, 343
HpyCH4V TGCA 4 cut(s) 311, 380, 434, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 364, 400
HpySE526I ACGT 2 cut(s) 258, 343
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 580, 612
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 485, 635
LmnI GCTCC 1 cut(s) 417
LweI GCATC 4 cut(s) 143, 236, 367, 528
MaeI CTAG 4 cut(s) 33, 141, 507, 569
MaeII ACGT 2 cut(s) 258, 343
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 487, 637
MboI GATC 2 cut(s) 485, 635
MboII GAAGA 2 cut(s) 307, 630
MfeI CAATTG 2 cut(s) 265, 543
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 3 cut(s) 265, 275, 543
MlyI GAGTC 2 cut(s) 118, 543
MnlI CCTC 5 cut(s) 103, 292, 304, 331, 525
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 600
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 4 cut(s) 106, 200, 272, 490
MunI CAATTG 2 cut(s) 265, 543
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 3 cut(s) 106, 200, 272
MwoI GCNNNNNNNGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 490
NdeII GATC 2 cut(s) 485, 635
NlaIII CATG 2 cut(s) 580, 612
NlaIV GGNNCC 2 cut(s) 130, 536
NmuCI GTSAC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 3 cut(s) 14, 425, 587
PfoI TCCNGGA 1 cut(s) 104
PleI GAGTC 2 cut(s) 117, 543
PpsI GAGTC 2 cut(s) 117, 543
PsiI TTATAA 1 cut(s) 57
Psp6I CCWGG 3 cut(s) 104, 198, 270
PspGI CCWGG 3 cut(s) 104, 198, 270
PspN4I GGNNCC 2 cut(s) 130, 536
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 2 cut(s) 10, 130
RsaNI GTAC 2 cut(s) 9, 129
SaqAI TTAA 1 cut(s) 462
Sau3AI GATC 2 cut(s) 485, 635
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 2 cut(s) 118, 543
ScrFI CCNGG 4 cut(s) 106, 200, 272, 490
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 4 cut(s) 143, 236, 367, 528
SfcI CTRYAG 1 cut(s) 450
Sse9I AATT 3 cut(s) 265, 275, 543
SsiI CCGC 3 cut(s) 132, 538, 598
SspMI CTAG 4 cut(s) 33, 141, 507, 569
StyD4I CCNGG 4 cut(s) 104, 198, 270, 488
TaiI ACGT 2 cut(s) 261, 346
TasI AATT 3 cut(s) 265, 275, 543
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 3 cut(s) 14, 425, 587
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 374, 565, 600
TspGWI ACGGA 1 cut(s) 236
XapI RAATTY 1 cut(s) 275
XspI CTAG 4 cut(s) 33, 141, 507, 569
ZraI GACGTC 1 cut(s) 259
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.