Rh1BG030800

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
N/A
Physical Location & Seq
Forward (+)
4135452 .. 4164963
29512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG030800.1

Sequence Viewer

Length: 1119 bp
ATGGTCGATCATTCTAGCTTCTCGAGGACTAATTTCCAGAAACAGCAAGGATTCGAGATTCGCCCTTTGTTTGAAGAACATGGAGAAGCGGTAGAGGTTGCTCTGATCAAAGATAAGAAAATAGGACTGCAGCAAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTTTGCCTTTATGGCAAAGTTTTGATCAACCAGCCCATACTTTTCTACCAGAAAGCAAAATTGGGTTCAACAATGTTACAAAGCGAACTCAAGTCCTGACTTCATGGAAGAATTCTGAGGATCCTTCACCGGGTCAATTCTCTCTTGAGCTAGACCCAACGAGCAAGCCATATATTATAAAGTGGAATAGGTCTCAACAGTATTGGACAAGTGGACTTTGGGATCAAAACAGACATGTGTTCAGTTTGAGTCCCGAGATGAGGCACTATATCTACAATTTCAGCTATGTTACAAACGAAAATGAGAGCTACTTCACCTATACTCTTTATGATGCTAGCATCACATCTCGAATAATAATGGATGTATCGGGTCAGGTTCAGCAACTGTCCTGGTTGCACTCTCAGGGATGGTACTTGTTTTGGTCTCGACCAAGGAAACAATGTGATGTTTATGGTCTATATGGGCCATTTAGTAGTTGCAGTGAGAAATCCTTGCCCTTATGTAATTGTTTGAATGGTTATGAACCGAAATTGAAGGTGGGTTGGGATTTGCAGGATTACTCTCTAGGGTGTTCAAGAAAAACCAGGCTGCAGTGTGGAAATGTTACTGGTGTTGATGGGATGAGTGACCAGTTTATAGAAATGTCTAGCAAGCTATCATCCGCAGATATACAGTTTCAGAATTTGACTTATGTTTATAGTATGGAAGACTGTGAATCAATTTTCTTAAATGATTGCAATTGCACTGCTTATGGTTATAGCAGCTCTTCTTCTGAATGTTCAACTTGGAAAGGAGATATGTGGGCGGATGAAAATGGAAGAACTTTATACATCAGAATACCAGCTTCTGATCCCATAAGTAATGTGATGTTAATTGGTGTGTGGTGGGTGGCCTTAACTTTGGGCCATCATATGTGTTACTCAAGCCGATATTTTTCTTTTCTCTGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

372

Amino Acids

42.86

Weight (kDa)

5.78

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 44 - 92 2.2e-12 D-mannose binding lectin
S_locus_glycop PF00954 124 - 232 1.3e-25 S-locus glycoprotein domain
PAN_2 PF08276 264 - 322 4.2e-07 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 1104
AciI CCGC 3 cut(s) 89, 828, 971
AclWI GGATC 4 cut(s) 281, 294, 396, 1010
AcsI RAATTY 2 cut(s) 277, 847
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 296, 426
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 6 cut(s) 74, 235, 679, 700, 741, 948
AjnI CCWGG 2 cut(s) 554, 749
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 8 cut(s) 18, 161, 316, 450, 474, 820, 930, 1010
AluI AGCT 8 cut(s) 18, 161, 316, 450, 474, 820, 930, 1010
Alw26I GTCTC 2 cut(s) 363, 594
AlwI GGATC 4 cut(s) 281, 294, 396, 1010
AlwNI CAGNNNCTG 2 cut(s) 550, 1013
Ama87I CYCGRG 2 cut(s) 22, 419
AoxI GGCC 3 cut(s) 629, 1056, 1069
ApeKI GCWGC 3 cut(s) 130, 754, 927
ApoI RAATTY 2 cut(s) 277, 847
AspS9I GGNCC 2 cut(s) 629, 1069
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 285, 472
AsuNHI GCTAGC 1 cut(s) 500
AvaI CYCGRG 2 cut(s) 22, 419
BamHI GGATCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 142, 741, 939
BccI CCATC 3 cut(s) 567, 776, 1080
BciT130I CCWGG 2 cut(s) 556, 751
BclI TGATCA 2 cut(s) 105, 190
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 363, 594
BfaI CTAG 5 cut(s) 15, 317, 501, 731, 813
BfmI CTRYAG 3 cut(s) 128, 755, 1111
BfuAI ACCTGC 1 cut(s) 1104
BglI GCCNNNNNGGC 1 cut(s) 178
BisI GCNGC 3 cut(s) 131, 755, 928
BlsI GCNGC 3 cut(s) 132, 756, 929
Bme1390I CCNGG 3 cut(s) 297, 556, 751
BmeT110I CYCGRG 2 cut(s) 22, 419
BmgT120I GGNCC 2 cut(s) 629, 1069
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 3 cut(s) 297, 556, 751
BmsI GCATC 2 cut(s) 487, 513
BmtI GCTAGC 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 879
BpuEI CTTGAG 3 cut(s) 240, 332, 1072
BpuMI CCSGG 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 363, 594
BsaJI CCNNGG 1 cut(s) 596
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 426
Bse1I ACTGG 2 cut(s) 778, 796
BseBI CCWGG 2 cut(s) 556, 751
BseDI CCNNGG 1 cut(s) 596
BseGI GGATG 5 cut(s) 532, 578, 792, 824, 979
BseLI CCNNNNNNNGG 2 cut(s) 296, 426
BseMII CTCAG 2 cut(s) 273, 581
BseNI ACTGG 2 cut(s) 778, 796
BseXI GCAGC 3 cut(s) 142, 741, 939
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 3 cut(s) 631, 1058, 1071
BsiHKCI CYCGRG 2 cut(s) 22, 419
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 296, 426
BsmAI GTCTC 2 cut(s) 363, 594
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 3 cut(s) 631, 1058, 1071
Bso31I GGTCTC 2 cut(s) 363, 594
BsoBI CYCGRG 2 cut(s) 22, 419
Bsp143I GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
BspACI CCGC 3 cut(s) 89, 828, 971
BspANI GGCC 3 cut(s) 631, 1058, 1071
BspCNI CTCAG 2 cut(s) 274, 580
BspLI GGNNCC 1 cut(s) 288
BspMAI CTGCAG 3 cut(s) 132, 759, 1115
BspMI ACCTGC 1 cut(s) 1104
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 4 cut(s) 281, 294, 396, 1010
BspQI GCTCTTC 1 cut(s) 937
BspTNI GGTCTC 2 cut(s) 363, 594
BsrI ACTGG 2 cut(s) 778, 796
BssECI CCNNGG 1 cut(s) 596
BssMI GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 2 cut(s) 556, 751
Bst4CI ACNGT 4 cut(s) 366, 552, 840, 878
Bst6I CTCTTC 1 cut(s) 937
BstC8I GCNNGC 3 cut(s) 332, 502, 818
BstDEI CTNAG 3 cut(s) 155, 282, 567
BstF5I GGATG 5 cut(s) 532, 578, 792, 824, 979
BstKTI GATC 6 cut(s) 10, 108, 193, 289, 391, 1018
BstMAI GTCTC 2 cut(s) 363, 594
BstMBI GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 556, 751
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 295, 554, 749
BstSFI CTRYAG 3 cut(s) 128, 755, 1111
BstV1I GCAGC 3 cut(s) 142, 741, 939
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 3 cut(s) 631, 1058, 1071
BtsCI GGATG 5 cut(s) 532, 578, 792, 824, 979
BtsI GCAGTG 3 cut(s) 652, 764, 909
BtsIMutI CAGTG 3 cut(s) 652, 764, 909
BveI ACCTGC 1 cut(s) 1104
Cac8I GCNNGC 3 cut(s) 332, 502, 818
CaiI CAGNNNCTG 2 cut(s) 550, 1013
Cfr13I GGNCC 2 cut(s) 629, 1069
Csp6I GTAC 1 cut(s) 577
CviAII CATG 3 cut(s) 80, 270, 401
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 3 cut(s) 155, 282, 567
DpnI GATC 6 cut(s) 9, 107, 192, 288, 390, 1017
DpnII GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
Eam1104I CTCTTC 1 cut(s) 937
EarI CTCTTC 1 cut(s) 937
EciI GGCGGA 1 cut(s) 986
Eco130I CCWWGG 1 cut(s) 596
Eco31I GGTCTC 2 cut(s) 363, 594
Eco88I CYCGRG 2 cut(s) 22, 419
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 554, 749
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 3 cut(s) 83, 273, 404
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 79, 269, 400
FauNDI CATATG 1 cut(s) 1077
FbaI TGATCA 2 cut(s) 105, 190
Fnu4HI GCNGC 3 cut(s) 131, 755, 928
FokI GGATG 5 cut(s) 539, 585, 799, 811, 986
Fsp4HI GCNGC 3 cut(s) 131, 755, 928
FspBI CTAG 5 cut(s) 15, 317, 501, 731, 813
GluI GCNGC 3 cut(s) 131, 755, 928
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 3 cut(s) 631, 1058, 1071
HapII CCGG 1 cut(s) 296
Hin1II CATG 3 cut(s) 83, 273, 404
HinfI GANTC 4 cut(s) 51, 58, 415, 881
HpaII CCGG 1 cut(s) 296
HphI GGTGA 2 cut(s) 285, 472
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 6 cut(s) 105, 283, 846, 940, 1001, 1015
Hpy188III TCNNGA 9 cut(s) 22, 37, 55, 262, 311, 419, 513, 591, 741
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 300, 694
HpyCH4III ACNGT 4 cut(s) 366, 552, 840, 878
HpyCH4V TGCA 8 cut(s) 130, 562, 645, 718, 757, 903, 909, 1113
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 155, 282, 567
Hsp92II CATG 3 cut(s) 83, 273, 404
Ksp22I TGATCA 2 cut(s) 105, 190
Kzo9I GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
LguI GCTCTTC 1 cut(s) 937
Lsp1109I GCAGC 3 cut(s) 142, 741, 939
LweI GCATC 2 cut(s) 487, 513
MaeI CTAG 5 cut(s) 15, 317, 501, 731, 813
MaeIII GTNAC 5 cut(s) 241, 454, 769, 791, 1082
MalI GATC 6 cut(s) 9, 107, 192, 288, 390, 1017
MboI GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
MboII GAAGA 6 cut(s) 86, 286, 884, 924, 927, 996
MfeI CAATTG 1 cut(s) 904
MflI RGATCY 1 cut(s) 286
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 4 cut(s) 18, 88, 277, 420
MseI TTAA 3 cut(s) 893, 1037, 1061
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 3 cut(s) 297, 556, 751
MunI CAATTG 1 cut(s) 904
MvaI CCWGG 2 cut(s) 556, 751
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 297
NdeI CATATG 1 cut(s) 1077
NdeII GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 3 cut(s) 83, 273, 404
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 791
NspI RCATGY 1 cut(s) 404
PaeR7I CTCGAG 1 cut(s) 22
PciI ACATGT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 937
PfeI GAWTC 3 cut(s) 51, 58, 881
PkrI GCNGC 3 cut(s) 132, 756, 929
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PscI ACATGT 1 cut(s) 400
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 554, 749
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 554, 749
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 629, 1069
PstI CTGCAG 3 cut(s) 132, 759, 1115
PstNI CAGNNNCTG 2 cut(s) 550, 1013
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 937
SaqAI TTAA 3 cut(s) 893, 1037, 1061
SatI GCNGC 3 cut(s) 131, 755, 928
Sau3AI GATC 6 cut(s) 7, 105, 190, 286, 388, 1015
Sau96I GGNCC 2 cut(s) 629, 1069
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 3 cut(s) 297, 556, 751
SfaNI GCATC 2 cut(s) 487, 513
SfcI CTRYAG 3 cut(s) 128, 755, 1111
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 4 cut(s) 22, 255, 311, 1087
SmoI CTYRAG 4 cut(s) 22, 255, 311, 1087
SsiI CCGC 3 cut(s) 89, 828, 971
SspMI CTAG 5 cut(s) 15, 317, 501, 731, 813
StyD4I CCNGG 3 cut(s) 295, 554, 749
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 4 cut(s) 366, 552, 840, 878
TaqI TCGA 5 cut(s) 6, 23, 54, 514, 592
TfiI GAWTC 3 cut(s) 51, 58, 881
Tru1I TTAA 3 cut(s) 893, 1037, 1061
Tru9I TTAA 3 cut(s) 893, 1037, 1061
TscAI CASTG 3 cut(s) 652, 764, 916
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 3 cut(s) 130, 754, 927
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 3 cut(s) 258, 702, 990
TspRI CASTG 3 cut(s) 652, 764, 916
XapI RAATTY 2 cut(s) 277, 847
XceI RCATGY 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 22
XspI CTAG 5 cut(s) 15, 317, 501, 731, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.