Rh1BG043800
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
N/A
Physical Location & Seq
Reverse (-)
5805208 .. 5806137
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG043800.1

Sequence Viewer

Length: 219 bp
ATGGCCGCACGTCTTCACTCCACTCGTGTTCTAGGAACCTTTGGTTATCATGCCCCAAAATACGCGATGACTGGACAGTCGAATGCCAAAAGTGATACTTACAGTTTTGGTGCTGTCCTGCTAGTGCTTTTGACCGGAAGAAAACCTGTTGATCATACATTACCACGCGGACAGCAGAGCCTAGTGACATGGGTACTATATCTGTTATCTGTCTCTTAG

Protein Analysis

72

Amino Acids

7.88

Weight (kDa)

10.11

Isoelectric Point (pI)

21.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
AccII CGCG 2 cut(s) 65, 168
AciI CCGC 2 cut(s) 6, 168
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 195
AjiI CACGTC 1 cut(s) 11
AoxI GGCC 1 cut(s) 3
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 5
BclI TGATCA 1 cut(s) 151
BfaI CTAG 3 cut(s) 32, 122, 182
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 65, 168
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 135
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 2 cut(s) 6, 168
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 2 cut(s) 65, 168
BspLI GGNNCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 151
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 78, 104
BstDEI CTNAG 1 cut(s) 216
BstFNI CGCG 2 cut(s) 65, 168
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstUI CGCG 2 cut(s) 65, 168
BstV2I GAAGAC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 194
CviAII CATG 2 cut(s) 50, 189
CviJI RGCY 2 cut(s) 5, 180
CviKI_1 RGCY 2 cut(s) 5, 180
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 53, 192
FaiI YATR 4 cut(s) 51, 156, 190, 199
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FatI CATG 2 cut(s) 49, 188
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 32, 122, 182
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 53, 192
HpaII CCGG 1 cut(s) 135
HpyCH4III ACNGT 2 cut(s) 78, 104
HpyCH4IV ACGT 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 53, 192
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 57, 131, 148, 159
MaeI CTAG 3 cut(s) 32, 122, 182
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 5, 150
MspI CCGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 88
MvnI CGCG 2 cut(s) 65, 168
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 53, 192
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 184
PctI GAATGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 151
SetI ASST 3 cut(s) 13, 41, 148
SsiI CCGC 2 cut(s) 6, 168
SspMI CTAG 3 cut(s) 32, 122, 182
TaaI ACNGT 2 cut(s) 78, 104
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 80
TauI GCSGC 1 cut(s) 8
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
XspI CTAG 3 cut(s) 32, 122, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.