Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8522333 .. 8522965

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG057500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGAGGAAAGCATACTCAAACTGATTTAGGCGTCAAACCATCAAGCACCGTCTTCGCAAAATCTGAAGAAGGTTCATCAACATCAGTTTCACTTGCACCACGAGCAAGTAATGAAGCAGACCAACAACAACATGCCGTATCTCTCAACGTCAAAGAGGCACCGATTGTGTCTTCCTACAACGACAAAATCCGTCCCCTCCTAGATGCCGTTGACAAGCTCCGTAACCTGATGGTTATGGAAGAAGGGATCCAGCTCCCCACTATTGTCGTCGTCGGAGACCAATCATCTGGAAAGTCTAGCGTCCTGGAATCCCTCGCGAGCATCAGCCTGCCACGTGGACAAGGTATCTGCACCAGGGTGCCTCTTATAATGAGGCTTCAACACCATTCAAGTTCAGAACCGGAGCTTTCCTTGGAATACAATGGTAAAGTTGAGCGCACTGATGAGGCCAGAGTTTCTGAAGATATTGTTAAAGCGACTGATGATATCGCAGGTGGAGGTAAGGGTATCTCTAACACGCCTTTAACTCTGTTAGTGAAGAAGAATGGTGTTCCGGATTTAACAATGGTGGATCTCCCTGGAATCACCAGAGTTCCTGTTCATGGTCAGCCTGAGAATATCTATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

210

Amino Acids

22.43

Weight (kDa)

5.4

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	89 - 204	1.3e-27	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	2 cut(s)	160, 361
AccII	CGCG	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	556
AclWI	GGATC	3 cut(s)	244, 257, 582
AcuI	CTGAAG	2 cut(s)	87, 483
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	2 cut(s)	383, 393
AjnI	CCWGG	3 cut(s)	306, 356, 580
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	3 cut(s)	220, 256, 409
AluI	AGCT	3 cut(s)	220, 256, 409
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	244, 257, 582
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	580
BamHI	GGATCC	1 cut(s)	249
BanI	GGYRCC	2 cut(s)	160, 361
BauI	CACGAG	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	46, 165
BccI	CCATC	2 cut(s)	49, 226
BceAI	ACGGC	2 cut(s)	122, 194
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	3 cut(s)	308, 358, 582
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	203, 300, 631
BfuAI	ACCTGC	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	308, 358, 582
BmiI	GGNNCC	3 cut(s)	162, 251, 363
BmrFI	CCNGG	3 cut(s)	308, 358, 582
BmsI	GCATC	2 cut(s)	196, 333
BpiI	GAAGAC	2 cut(s)	46, 165
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	357, 414, 580
BsaWI	WCCGGW	2 cut(s)	403, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	308, 358, 582
BseDI	CCNNGG	3 cut(s)	357, 414, 580
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	606
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	2 cut(s)	160, 361
BsiSI	CCGG	2 cut(s)	404, 557
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	556
Bsp143I	GATC	2 cut(s)	249, 574
Bsp68I	TCGCGA	1 cut(s)	320
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	162, 251, 363
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	244, 257, 582
BspT107I	GGYRCC	2 cut(s)	160, 361
BspTNI	GGTCTC	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	357, 414, 580
BssMI	GATC	2 cut(s)	249, 574
BssNI	GRCGYC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	308, 358, 582
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	322, 332
BstDEI	CTNAG	1 cut(s)	615
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	2 cut(s)	252, 577
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	249, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	3 cut(s)	308, 358, 582
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	306, 356, 580
BstUI	CGCG	1 cut(s)	320
BstV2I	GAAGAC	2 cut(s)	46, 165
BstX2I	RGATCY	2 cut(s)	249, 574
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	2 cut(s)	249, 574
BsuRI	GGCC	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	441
BtuMI	TCGCGA	1 cut(s)	320
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	322, 332
CfoI	GCGC	1 cut(s)	441
CseI	GACGC	2 cut(s)	22, 292
CviAII	CATG	2 cut(s)	134, 605
CviJI	RGCY	7 cut(s)	220, 256, 330, 379, 409, 452, 613
CviKI_1	RGCY	7 cut(s)	220, 256, 330, 379, 409, 452, 613
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	2 cut(s)	251, 576
DpnII	GATC	2 cut(s)	249, 574
Eco130I	CCWWGG	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	87, 483
Eco72I	CACGTG	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	306, 356, 580
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	2 cut(s)	137, 608
FaiI	YATR	6 cut(s)	15, 135, 239, 371, 606, 627
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	133, 604
FspBI	CTAG	3 cut(s)	203, 300, 631
GlaI	GCGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	404, 557
HgaI	GACGC	2 cut(s)	22, 292
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	137, 608
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	311, 585
HpaII	CCGG	2 cut(s)	404, 557
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	214, 341
Hpy188I	TCNGA	4 cut(s)	67, 278, 400, 463
Hpy188III	TCNNGA	3 cut(s)	291, 319, 557
Hpy8I	GTNNAC	2 cut(s)	214, 341
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	2 cut(s)	65, 239
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	150, 337
HpyCH4V	TGCA	2 cut(s)	98, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	2 cut(s)	150, 337
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	137, 608
HspAI	GCGC	1 cut(s)	439
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	249, 574
LmnI	GCTCC	3 cut(s)	225, 261, 406
LweI	GCATC	2 cut(s)	196, 333
MaeI	CTAG	3 cut(s)	203, 300, 631
MaeII	ACGT	2 cut(s)	150, 337
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	2 cut(s)	251, 576
MboI	GATC	2 cut(s)	249, 574
MboII	GAAGA	7 cut(s)	46, 80, 165, 254, 476, 553, 556
MflI	RGATCY	2 cut(s)	249, 574
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	151, 209, 326, 369, 375, 442, 494
MroI	TCCGGA	1 cut(s)	556
MseI	TTAA	3 cut(s)	474, 527, 563
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	2 cut(s)	404, 557
MspR9I	CCNGG	3 cut(s)	308, 358, 582
MvaI	CCWGG	3 cut(s)	308, 358, 582
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	249, 574
NlaIII	CATG	2 cut(s)	137, 608
NlaIV	GGNNCC	3 cut(s)	162, 251, 363
NruI	TCGCGA	1 cut(s)	320
NspI	RCATGY	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	311, 585
PfoI	TCCNGGA	1 cut(s)	306
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	306, 356, 580
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	3 cut(s)	306, 356, 580
PspN4I	GGNNCC	3 cut(s)	162, 251, 363
PsuI	RGATCY	2 cut(s)	249, 574
RruI	TCGCGA	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	474, 527, 563
Sau3AI	GATC	2 cut(s)	249, 574
ScrFI	CCNGG	3 cut(s)	308, 358, 582
SfaNI	GCATC	2 cut(s)	196, 333
SmiMI	CAYNNNNRTG	1 cut(s)	359
SspMI	CTAG	3 cut(s)	203, 300, 631
StyD4I	CCNGG	3 cut(s)	306, 356, 580
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	153, 340
TfiI	GAWTC	2 cut(s)	311, 585
Tru1I	TTAA	3 cut(s)	474, 527, 563
Tru9I	TTAA	3 cut(s)	474, 527, 563
TscAI	CASTG	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	66, 129, 593
TspGWI	ACGGA	2 cut(s)	182, 212
TspRI	CASTG	1 cut(s)	448
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	3 cut(s)	203, 300, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.