Rh1BG067100

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
N/A
Physical Location & Seq
Forward (+)
10218627 .. 10241034
22408 bp
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UTR
Exon/CDS
Intron
Rh1BG067100.1

Sequence Viewer

Length: 312 bp
ATGCCCCAGCTCACTAAGAGATCAAGGATTCCAAATATTATGGATCGCGTGATAAAAGATACCATGGATTTAAAACACTTATACTTGGAACAAAACACTATCCCATTTGCGGCGTCAACAACACCATCAATTCTCATCTGGACCGCTCACTCATTCAAGAATCAGATTTGGAGTTCCAGAAGCTTAAGTGATCCTTTTGAGCAAATGAGGCAGGCGTTGATGATGATTGTTATCCAGACTGGAATCATGACCTCCTTGTGGCATGGAAGATTCTGGCAATTCAGAAGCTTCCAAGGTTTCCACATACCATAA

Protein Analysis

103

Amino Acids

12.18

Weight (kDa)

10.5

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AccII CGCG 1 cut(s) 48
AciI CCGC 2 cut(s) 110, 144
AclWI GGATC 2 cut(s) 51, 185
AcyI GRCGYC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 109, 258
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 3 cut(s) 10, 183, 288
AluI AGCT 3 cut(s) 10, 183, 288
AlwI GGATC 2 cut(s) 51, 185
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BccI CCATC 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 63, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 258
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 63, 292
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 109, 258
BseNI ACTGG 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 109, 258
Bsp143I GATC 3 cut(s) 20, 43, 190
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 110, 144
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 246
BspPI GGATC 2 cut(s) 51, 185
BspTI CTTAAG 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 63, 292
BssMI GATC 3 cut(s) 20, 43, 190
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 63, 292
BstACI GRCGYC 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 3 cut(s) 23, 46, 193
BstMBI GATC 3 cut(s) 20, 43, 190
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstUI CGCG 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 213
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 102
CviAII CATG 3 cut(s) 64, 247, 263
CviJI RGCY 3 cut(s) 10, 183, 288
CviKI_1 RGCY 3 cut(s) 10, 183, 288
DdeI CTNAG 1 cut(s) 15
DpnI GATC 3 cut(s) 22, 45, 192
DpnII GATC 3 cut(s) 20, 43, 190
DraI TTTAAA 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 63, 292
Eco47I GGWCC 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 63, 292
ErhI CCWWGG 2 cut(s) 63, 292
FaeI CATG 3 cut(s) 67, 250, 266
FaiI YATR 7 cut(s) 41, 65, 82, 248, 264, 305, 310
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FatI CATG 3 cut(s) 63, 246, 262
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 10
HgaI GACGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 3 cut(s) 67, 250, 266
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 2 cut(s) 181, 286
HinfI GANTC 4 cut(s) 28, 160, 243, 270
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 165, 284
Hpy188III TCNNGA 5 cut(s) 139, 157, 177, 235, 247
Hpy8I GTNNAC 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 3 cut(s) 67, 250, 266
Kzo9I GATC 3 cut(s) 20, 43, 190
LpnPI CCDG 7 cut(s) 20, 124, 190, 197, 225, 248, 259
MalI GATC 3 cut(s) 22, 45, 192
MbiI CCGCTC 1 cut(s) 146
MboI GATC 3 cut(s) 20, 43, 190
MboII GAAGA 1 cut(s) 279
MluCI AATT 2 cut(s) 129, 278
MnlI CCTC 2 cut(s) 201, 262
MseI TTAA 2 cut(s) 71, 185
MspCI CTTAAG 1 cut(s) 184
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 20, 43, 190
NlaIII CATG 3 cut(s) 67, 250, 266
PagI TCATGA 1 cut(s) 246
PfeI GAWTC 4 cut(s) 28, 160, 243, 270
PkrI GCNGC 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 71, 185
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 20, 43, 190
Sau96I GGNCC 1 cut(s) 141
SetI ASST 5 cut(s) 12, 185, 254, 290, 298
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 129, 278
SsiI CCGC 2 cut(s) 110, 144
SspI AATATT 1 cut(s) 37
StyI CCWWGG 2 cut(s) 63, 292
TasI AATT 2 cut(s) 129, 278
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 4 cut(s) 28, 160, 243, 270
Tru1I TTAA 2 cut(s) 71, 185
Tru9I TTAA 2 cut(s) 71, 185
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.