Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18691939 .. 18694797

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAGCTATTACCTCAGAAATTCTCATTTCTTTCTTTTTTCTATCTTTCATGGCATTCTTACAAGGGATTGCAGCATCCCAAAATGCTTGCACAGAATCCATGTGTTCTGATAATGCCCTGGCTATCCACGTCCCATTCCGCCTCAGATATCATGAGCAGTCGACAGTTCTTGATGAGCAGCAGCAGCAGAGTATACTAGCAAAATTCTATGTCAAACACATCGATTATATCCATCAAAGCATCGAAGTAGACTCCTTCTCTGAATGCCTGTTGCTAAAGCCTTTCGAAATGCCAATTTTCCCCTTCTCCTTGTACGTCTCAGAAATGAATGACTTTGACTACTTTGAATACTTTGACAACTTTACCTTGTTACGTTGTCCTACTGAATTTGAAATAGATACATGGGGCGAAGTCCGGTGCCTTGGTCACTCAGCTGCCTACAGAATTCAGAGGTTTTATTCTGAAAATTCAGTAGTCGAATACGCACCGTACATACAGTCTTGTACAAAGATGTATGATGTTTTATCATTTCCATCCACAAGACCACAACGTACTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

22.09

Weight (kDa)

4.69

Isoelectric Point (pI)

77.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	420
AccI	GTMKAC	3 cut(s)	164, 196, 252
AciI	CCGC	1 cut(s)	142
AcsI	RAATTY	5 cut(s)	21, 206, 389, 447, 469
AfaI	GTAC	4 cut(s)	317, 494, 508, 556
AgsI	TTSAA	2 cut(s)	350, 395
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	8, 437
AluI	AGCT	2 cut(s)	8, 437
Alw26I	GTCTC	1 cut(s)	325
ApeKI	GCWGC	5 cut(s)	74, 181, 184, 187, 437
ApoI	RAATTY	5 cut(s)	21, 206, 389, 447, 469
AsuII	TTCGAA	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	420
BbvI	GCAGC	5 cut(s)	86, 193, 196, 199, 424
BccI	CCATC	2 cut(s)	243, 544
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	5 cut(s)	75, 182, 185, 188, 438
BlsI	GCNGC	5 cut(s)	76, 183, 186, 189, 439
Bme1390I	CCNGG	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	86, 252
Bpu14I	TTCGAA	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	120, 424
BsaWI	WCCGGW	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	120, 424
BseGI	GGATG	2 cut(s)	77, 536
BseMII	CTCAG	4 cut(s)	30, 160, 336, 447
BseXI	GCAGC	5 cut(s)	86, 193, 196, 199, 424
BshNI	GGYRCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	56, 272
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	506
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	4 cut(s)	29, 159, 335, 446
BspDI	ATCGAT	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	422
BspT104I	TTCGAA	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	420
BsrGI	TGTACA	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	120, 424
BssNAI	GTATAC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	424
Bst1107I	GTATAC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	169, 492, 501
BstAUI	TGTACA	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	4 cut(s)	16, 146, 322, 433
BstF5I	GGATG	2 cut(s)	77, 536
BstMAI	GTCTC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	442
BstV1I	GCAGC	5 cut(s)	86, 193, 196, 199, 424
BstZ17I	GTATAC	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	77, 536
Cac8I	GCNNGC	1 cut(s)	91
CciI	TCATGA	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	316, 493, 507, 555
CviAII	CATG	4 cut(s)	52, 103, 155, 405
CviJI	RGCY	4 cut(s)	8, 125, 283, 437
CviKI_1	RGCY	4 cut(s)	8, 125, 283, 437
CviQI	GTAC	4 cut(s)	316, 493, 507, 555
DdeI	CTNAG	4 cut(s)	16, 146, 322, 433
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	55, 106, 158, 408
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	51, 102, 154, 404
FblI	GTMKAC	3 cut(s)	164, 196, 252
Fnu4HI	GCNGC	5 cut(s)	75, 182, 185, 188, 438
FokI	GGATG	2 cut(s)	64, 523
Fsp4HI	GCNGC	5 cut(s)	75, 182, 185, 188, 438
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	5 cut(s)	75, 182, 185, 188, 438
HapII	CCGG	1 cut(s)	418
Hin1II	CATG	4 cut(s)	55, 106, 158, 408
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	98, 254
HpaII	CCGG	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	165, 197, 253
Hpy188I	TCNGA	7 cut(s)	19, 112, 149, 265, 325, 453, 466
Hpy188III	TCNNGA	2 cut(s)	155, 173
Hpy8I	GTNNAC	3 cut(s)	165, 197, 253
HpyAV	CCTTC	2 cut(s)	268, 316
HpyCH4III	ACNGT	3 cut(s)	169, 492, 501
HpyCH4IV	ACGT	4 cut(s)	132, 318, 376, 553
HpyCH4V	TGCA	2 cut(s)	74, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	4 cut(s)	16, 146, 322, 433
HpySE526I	ACGT	4 cut(s)	132, 318, 376, 553
Hsp92II	CATG	4 cut(s)	55, 106, 158, 408
LpnPI	CCDG	4 cut(s)	107, 134, 284, 431
Lsp1109I	GCAGC	5 cut(s)	86, 193, 196, 199, 424
LweI	GCATC	2 cut(s)	86, 252
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	4 cut(s)	132, 318, 376, 553
MaeIII	GTNAC	2 cut(s)	372, 428
MluCI	AATT	6 cut(s)	21, 206, 297, 389, 447, 469
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	25, 155, 447
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	56, 272
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	55, 106, 158, 408
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	428
NspV	TTCGAA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	2 cut(s)	56, 272
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	76, 183, 186, 189, 439
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	4 cut(s)	317, 494, 508, 556
RsaNI	GTAC	4 cut(s)	316, 493, 507, 555
SalI	GTCGAC	1 cut(s)	163
SatI	GCNGC	5 cut(s)	75, 182, 185, 188, 438
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	9 cut(s)	10, 17, 135, 321, 371, 379, 439, 458, 556
SfaNI	GCATC	2 cut(s)	86, 252
SfcI	CTRYAG	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	288
Sse9I	AATT	6 cut(s)	21, 206, 297, 389, 447, 469
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	169, 492, 501
TaiI	ACGT	4 cut(s)	135, 321, 379, 556
TaqI	TCGA	5 cut(s)	164, 225, 246, 288, 480
TasI	AATT	6 cut(s)	21, 206, 297, 389, 447, 469
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	5 cut(s)	74, 181, 184, 187, 437
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	40, 344
XapI	RAATTY	5 cut(s)	21, 206, 389, 447, 469
XmiI	GTMKAC	3 cut(s)	164, 196, 252
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.