Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21327928 .. 21331341

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCTTGACAGAGTTAAAACACCAGTTGAAAATTCCTTGAGGGATGCAAAGCTCTCCTTCAAAGACCTAGATGAGGTCATACTTGTTGGTGGTTCAACACGTATACCTGCTGTTCAGGAGCTTGTCAGGAAGTTGACGGGGAAGGAACCAAATGTTACAGTCAATCCTGATGAAGTTGTTGCCCTTGGTGCTGCAGTTCAGCACTTGAAAGTTGAAACTATGCTTATTCAACAATTATATGCTACCAGCACTGAAGAACAGTCAAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

90

Amino Acids

9.93

Weight (kDa)

5.33

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 67	1.1e-27	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	6 cut(s)	29, 61, 96, 208, 215, 230
AluBI	AGCT	2 cut(s)	52, 121
AluI	AGCT	2 cut(s)	52, 121
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	184
BssNAI	GTATAC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	184
Bst1107I	GTATAC	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	160, 261
BstBAI	YACGTR	1 cut(s)	101
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	115
CviJI	RGCY	2 cut(s)	52, 121
CviKI_1	RGCY	2 cut(s)	52, 121
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	5 cut(s)	80, 104, 221, 238, 240
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	104, 135
Hpy188III	TCNNGA	4 cut(s)	116, 127, 167, 264
Hpy8I	GTNNAC	2 cut(s)	104, 135
HpyAV	CCTTC	2 cut(s)	67, 136
HpyCH4III	ACNGT	2 cut(s)	160, 261
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	47, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	36, 101, 112, 120, 180, 259
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	266
MluCI	AATT	2 cut(s)	31, 233
MnlI	CCTC	2 cut(s)	33, 67
MseI	TTAA	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	192
SetI	ASST	7 cut(s)	54, 69, 78, 103, 109, 123, 272
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	31, 233
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	160, 261
TaiI	ACGT	1 cut(s)	103
TasI	AATT	2 cut(s)	31, 233
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.