Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

34567807 .. 34569578

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGGAGCCAATGCTCCAAACTCATACCATGCTGTGGGGATTCACAATTCAATGCAGCAGCGGTTCTTGAAGCTCCCGCTATTGAAAATGTGGAGAAGAGCGAGGTCGACTACTTGCCTAGATTTTGTGAATTCACGCTTGAGCAGCTTAAAAATGCTACATCTGGTTTTGCAGTGGAGTACATTGTGTCTGAACAGGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAATTGGAAAACCAGATGAGAATTGCTGTTAAGCGCTTCAATAGGGTGGCTTGGCCTGATGCTCGGCAATTTGTGGAAGAGGCAAGATTGGTTGGTCAGCTCCGCAACCATAGATTGGTAAATTTGCTTGGCTGCTGCTGCCAAGGTGATGAGAGGTTGCTTGTGGCGGAATATATGCCCAATGACACACTTGCAAAACACCTTTTCCATTGGGATGCACAGCCTATGAAATGGACAATGAGATTGAGGGTTGTTTTACATCTTGCACAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTTTATTTGATGAGGTAACTGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

196

Amino Acids

22.43

Weight (kDa)

6.52

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	73 - 192	5.6e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	73 - 191	1.7e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	35, 346
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	4 cut(s)	62, 78, 334, 398
AcsI	RAATTY	2 cut(s)	131, 352
AfaI	GTAC	1 cut(s)	182
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	35, 346
AgsI	TTSAA	4 cut(s)	52, 71, 86, 271
AluBI	AGCT	3 cut(s)	74, 148, 331
AluI	AGCT	3 cut(s)	74, 148, 331
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	6 cut(s)	56, 59, 145, 363, 366, 369
ApoI	RAATTY	2 cut(s)	131, 352
AspLEI	GCGC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	535
BbvI	GCAGC	6 cut(s)	68, 71, 157, 350, 353, 356
BfaI	CTAG	2 cut(s)	120, 506
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	6 cut(s)	57, 60, 146, 364, 367, 370
BlsI	GCNGC	6 cut(s)	58, 61, 147, 365, 368, 371
BmiI	GGNNCC	2 cut(s)	8, 210
BmsI	GCATC	2 cut(s)	280, 436
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 346
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	35, 346
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	6 cut(s)	68, 71, 157, 350, 353, 356
BsgI	GTGCAG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	35, 346
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	535
BspACI	CCGC	4 cut(s)	62, 78, 334, 398
BspANI	GGCC	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	8, 210
BspQI	GCTCTTC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	92, 303
BstC8I	GCNNGC	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 369
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	6 cut(s)	68, 71, 157, 350, 353, 356
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	30, 542
CviQI	GTAC	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	92, 303
EarI	CTCTTC	2 cut(s)	92, 303
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	373
Eco47III	AGCGCT	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	2 cut(s)	33, 545
FaiI	YATR	8 cut(s)	26, 31, 225, 342, 405, 407, 458, 543
FatI	CATG	2 cut(s)	29, 541
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	6 cut(s)	57, 60, 146, 364, 367, 370
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	6 cut(s)	57, 60, 146, 364, 367, 370
FspBI	CTAG	2 cut(s)	120, 506
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	6 cut(s)	57, 60, 146, 364, 367, 370
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	286
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	33, 545
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	68, 542
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	56, 173, 425, 449, 497, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 369
Hsp92II	CATG	2 cut(s)	33, 545
HspAI	GCGC	1 cut(s)	265
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	5 cut(s)	6, 20, 79, 214, 336
LpnPI	CCDG	4 cut(s)	150, 182, 257, 300
Lsp1109I	GCAGC	6 cut(s)	68, 71, 157, 350, 353, 356
LweI	GCATC	2 cut(s)	280, 436
MaeI	CTAG	2 cut(s)	120, 506
MaeIII	GTNAC	1 cut(s)	577
MboII	GAAGA	2 cut(s)	109, 320
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	6 cut(s)	47, 131, 233, 252, 299, 352
MnlI	CCTC	5 cut(s)	97, 304, 378, 471, 568
MseI	TTAA	3 cut(s)	150, 261, 549
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	145, 369
NlaIII	CATG	2 cut(s)	33, 545
NlaIV	GGNNCC	2 cut(s)	8, 210
NmeAIII	GCCGAG	1 cut(s)	274
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	2 cut(s)	35, 346
PkrI	GCNGC	6 cut(s)	58, 61, 147, 365, 368, 371
PsiI	TTATAA	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	8, 210
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	150, 261, 549
SatI	GCNGC	6 cut(s)	57, 60, 146, 364, 367, 370
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	9 cut(s)	76, 108, 150, 333, 379, 389, 435, 549, 579
SfaNI	GCATC	2 cut(s)	280, 436
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	6 cut(s)	47, 131, 233, 252, 299, 352
SsiI	CCGC	4 cut(s)	62, 78, 334, 398
SspMI	CTAG	2 cut(s)	120, 506
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	47, 131, 233, 252, 299, 352
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	150, 261, 549
Tru9I	TTAA	3 cut(s)	150, 261, 549
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	6 cut(s)	56, 59, 145, 363, 366, 369
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	2 cut(s)	35, 346
XapI	RAATTY	2 cut(s)	131, 352
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	120, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.