Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

49341727 .. 49348105

Gene Structure 6379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG364100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGAGGAGGCGGTGGTTTTGAAATGGAGGAAGAAGGATGCTGTTCTGTGGTTTGGGTTGTCTCTGTTTCTGCTTTTTCCTCTTGCTACGTCACTGAACGATGAAGGGAAAGCCTTGATGTCAATCAAGGCCTCGTTCAGCAATGTAGCCAATGTTTTACTGGACTGGAATGATGCTCATGACGAAGATTTCTGTTCTTGGCGTGGAGTTTTCTGTGACAATGTCAGCCTCTCTGTGGCCTCCTTGAATTTGTCCAGCTTGAATCTGGGCGGGGAGATTTCGCCAGCCCTTGGAGATTTGGGGAACTTGGAATCCGTGGATTTGTCTGACAATAATCTGTCTGGAGACATACCCTTCTCGGTTTCAAAGCTTAAGAAGCTTGAGGTTTTGAATTTGAAGAACAATCAGTTGACTGGTCCTATCCCTATAACTCTTACCCAAATTCCAAACCTTAAAACTCTTGATCTTGCTCGGAACCAGCTCATTGGTGAGATACCAAGGCTAATATATTGGAATGAAGTTTTGCAGTACCTTGGATTGCGAGGCAACTCTTTGACTGGAGCACTGTCCCCTGATATGTGTCAATTAACTGGTCTGTGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCCCGATCCCTGACAACATTGGCAACTGTACAAGCTTTGAGATCCTGGACATATCGTACAATCAGATCACTGGTGGGATTCCATATAACATTGGATTTTTACAAGTGGCTACCCTGTCGCTACAAGGGAATAGACTGACTGGAAAGATTCCTGAGGTTATTGGTTTAATGCAGGCTCTTGCTGTTTTGGATTTAAGTGAGAATGAACTTGTAGGGTCAATTCCACCGATACTAGGCAATTTATCATACACTGGGAAACTATACCTGCATGGTAACAAGTTGACTGGGACAATTCCTCCTGAGCTCGGCAATATGTCAAAGCTTAGCTATTTGCAATTAAATGACAACAATCTGGTTGGTAGAATTCCTGGTGAGCTTGGGAAGCTGAACCAGTTGTTTGAATTGAATCTTGCCAACAATGAACTGGAAGGTCCCATTCCACATGACATCGGTTCCTGCACTGCCTTGAATCAATTCAACGTTCATGGAAATCGCTTGACAGGATCCATTCCTTTAGCATTGAGAAATCTGCAGAGCTTGACCTATCTGAATTTGTCAGCAAATGCCTTCAGTGGTAGAATTAATCTTGAGTTGGGACACATCATCAATCTTGACACTTTGGATTTGTCCAGCAACAATTTCTCTGGCCCTGTTCCTGCTTCCGTTGGCAATCTTGAGCACCTCCTGACTTTGAATTTGAGTGGGAATCATCTTGATGGTCCTTTGCCTGCAGAATTTGGGGACCTCAGGAGTGTTCAAATCATTGATATGTCATTCAACAATCTCTCTGGGAGCATTCCCTCAGAATTGGGTCAGTTGCAGAACCTTGCGGCATTGTTGCTTAATAACAACAACTTGCGTGGGAAGATACCTGATCAGCTAACCAACTGTTTCAGCCTTGAGACCTTGAATTTTTCATACAACAATCTGTCAGGCATTGTACCTCCCATGAGGAACTTTTCACGTTTTTCACCAAACAGCTTCATTGCAAACCCGCTGTTGTGCAGTGACTGGTTGGGATCGATATGCAGACCCGTTGCCCCCAAGTCCAGGGCGGTATTCTCCCGAGCAGCAGTTGTCTGTATGGCGTTAGGCTTCATCACATTATTATCCATGGTAATAGTTGCGATATACAAGTCCAACCAACCAAAGCAGTTACTGATGGGATCTACCAAGAATGGACAAGGTCCTGCTAAACTTGTAATCCTTCACATGGATATGGCCATACACAGCTTTGATGATATAATGAGAATCACTGAGAATCTAAATGAGAAGTATATCATAGGGTATGGTGCTTCTAGCACAGTGTACAAGTGTGTACTGAAAAATTCCCGACCAATGGCAATCAAGCGACTCTACAACCGGTATCCACACAACTGGAGGGAGTTTGAGACGGAACTTGAAACCATTGGCAGTATCAAGCATAGAAATTTAGTCAGTTTGCATGGGTATTCACTGTCTCCCTTGGGCAATCTCCTGTTCTATGACTACATGGAGAACGGGTCTCTGTGGGATATGCTTCATGGACCATCGAAAAAGGCTGTGGACAAGGAGTCTAACTTGCATCATCTGATATTGTCCAACGCGGATAACAATACTGTAATGGAGACTGTTGACCCTGAAGTTTCTGTCACCTGCATGGATATAACTCATGTCAAGAAAACTTTTCAACTCGCCCTGCTGTGCACCAAGCGAAACCCCACTGAGAGGCCAACAATGCATGAAGTTGCAAGGGTTTTGGTCTCCCTCCTACCTTTACATCACTCAAAGAAGCCTCTTTCAAAGGGTATCGACTATGATAAGTTTGCGGTTAACAAGGAACAACAACAACCAAAAGTGCAACAGCAGAAGCCTGTTCGGCAAGAAAGTCATTCATCTGATGCTCAATGGTTTCTTCGGTTTGGTGAGGTTATATCCAAGAACACACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

853

Amino Acids

94.16

Weight (kDa)

6.3

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 73	5e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	102 - 161	7.5e-10	Leucine rich repeat
LRR_4	PF12799	125 - 166	2e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	296 - 352	6.3e-06	Leucine rich repeat
LRR_14	PF23598	311 - 421	2.8e-08	Leucine-rich repeat region
LRR_8	PF13855	413 - 472	2.5e-08	Leucine rich repeat
LRR_14	PF23598	431 - 515	3.1e-08	Leucine-rich repeat region
Pkinase	PF00069	634 - 725	4.6e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	637 - 723	1.2e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2273
Acc36I	ACCTGC	2 cut(s)	903, 2273
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccII	CGCG	1 cut(s)	2216
AciI	CCGC	7 cut(s)	11, 270, 1460, 1625, 1685, 2216, 2438
AclI	AACGTT	1 cut(s)	1110
AclWI	GGATC	6 cut(s)	631, 667, 1128, 1141, 1657, 1804
AcoI	YGGCCR	1 cut(s)	1851
AcuI	CTGAAG	2 cut(s)	1183, 2271
AfaI	GTAC	7 cut(s)	530, 602, 661, 689, 1572, 1940, 1950
AfiI	CCNNNNNNNGG	8 cut(s)	235, 290, 863, 935, 1680, 1843, 1969, 2337
AflII	CTTAAG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	1992
AhdI	GACNNNNNGTC	1 cut(s)	2182
AjnI	CCWGG	3 cut(s)	675, 997, 1679
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
Alw21I	GWGCWC	4 cut(s)	565, 936, 1311, 2318
Alw26I	GTCTC	8 cut(s)	66, 339, 1526, 2015, 2094, 2139, 2231, 2377
Alw44I	GTGCAC	1 cut(s)	2314
AlwI	GGATC	6 cut(s)	631, 667, 1128, 1141, 1657, 1804
AlwNI	CAGNNNCTG	2 cut(s)	1641, 1789
Ama87I	CYCGRG	1 cut(s)	1695
AoxI	GGCC	6 cut(s)	129, 237, 631, 1276, 1851, 2339
ApaLI	GTGCAC	1 cut(s)	2314
ApeKI	GCWGC	1 cut(s)	1700
ArsI	GACNNNNNNTTYG	2 cut(s)	1309, 1341
AseI	ATTAAT	1 cut(s)	1212
AsiGI	ACCGGT	1 cut(s)	1992
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspS9I	GGNCC	8 cut(s)	416, 632, 1061, 1277, 1349, 1372, 1817, 2156
AsuHPI	GGTGA	5 cut(s)	500, 1013, 1593, 2254, 2546
AvaI	CYCGRG	1 cut(s)	1695
AvaII	GGWCC	6 cut(s)	416, 1061, 1349, 1372, 1817, 2156
AxyI	CCTNAGG	2 cut(s)	783, 1376
BaeGI	GKGCMC	1 cut(s)	2318
BalI	TGGCCA	1 cut(s)	1853
BamHI	GGATCC	1 cut(s)	1133
BanII	GRGCYC	1 cut(s)	936
Bbv12I	GWGCWC	4 cut(s)	565, 936, 1311, 2318
BbvI	GCAGC	1 cut(s)	1712
BccI	CCATC	3 cut(s)	1340, 1786, 2167
BciT130I	CCWGG	3 cut(s)	677, 999, 1681
BciVI	GTATCC	1 cut(s)	2007
BclI	TGATCA	1 cut(s)	1504
BcoDI	GTCTC	8 cut(s)	66, 339, 1526, 2015, 2094, 2139, 2231, 2377
BfaI	CTAG	2 cut(s)	863, 1929
BfmI	CTRYAG	2 cut(s)	1160, 1359
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	2 cut(s)	903, 2273
BfuI	GTATCC	1 cut(s)	2007
BglI	GCCNNNNNGGC	1 cut(s)	2488
BisI	GCNGC	2 cut(s)	1461, 1701
BlpI	GCTNAGC	1 cut(s)	953
BlsI	GCNGC	2 cut(s)	1462, 1702
Bme1390I	CCNGG	3 cut(s)	677, 999, 1681
Bme18I	GGWCC	6 cut(s)	416, 1061, 1349, 1372, 1817, 2156
BmeRI	GACNNNNNGTC	1 cut(s)	2182
BmeT110I	CYCGRG	1 cut(s)	1695
BmgT120I	GGNCC	8 cut(s)	416, 632, 1061, 1277, 1349, 1372, 1817, 2156
BmiI	GGNNCC	5 cut(s)	476, 1063, 1084, 1135, 1373
BmrFI	CCNGG	3 cut(s)	677, 999, 1681
BmrI	ACTGGG	2 cut(s)	891, 924
BmsI	GCATC	4 cut(s)	28, 163, 2203, 2500
BmuI	ACTGGG	2 cut(s)	891, 924
BpmI	CTGGAG	3 cut(s)	363, 579, 2029
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	953
BpuEI	CTTGAG	4 cut(s)	401, 1238, 1325, 1550
Bsa29I	ATCGAT	1 cut(s)	1652
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	3 cut(s)	1526, 2139, 2377
BsaJI	CCNNGG	7 cut(s)	289, 315, 497, 532, 1680, 1743, 2094
BsaWI	WCCGGW	1 cut(s)	1992
BsaXI	ACNNNNNCTCC	4 cut(s)	910, 940, 2117, 2147
Bsc4I	CCNNNNNNNGG	8 cut(s)	235, 290, 863, 935, 1680, 1843, 1969, 2337
Bse118I	RCCGGY	1 cut(s)	1992
Bse21I	CCTNAGG	2 cut(s)	783, 1376
Bse3DI	GCAATG	2 cut(s)	148, 1614
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	3 cut(s)	677, 999, 1681
BseCI	ATCGAT	1 cut(s)	1652
BseDI	CCNNGG	7 cut(s)	289, 315, 497, 532, 1680, 1743, 2094
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	8 cut(s)	235, 290, 863, 935, 1680, 1843, 1969, 2337
BseMI	GCAATG	2 cut(s)	148, 1614
BseMII	CTCAG	6 cut(s)	774, 921, 1390, 1446, 1878, 2325
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	2318
BseXI	GCAGC	1 cut(s)	1712
BsgI	GTGCAG	2 cut(s)	1072, 1654
Bsh1236I	CGCG	1 cut(s)	2216
BshFI	GGCC	6 cut(s)	131, 239, 633, 1278, 1853, 2341
BshTI	ACCGGT	1 cut(s)	1992
BshVI	ATCGAT	1 cut(s)	1652
BsiHKAI	GWGCWC	4 cut(s)	565, 936, 1311, 2318
BsiHKCI	CYCGRG	1 cut(s)	1695
BsiSI	CCGG	1 cut(s)	1993
BslFI	GGGAC	5 cut(s)	553, 931, 1047, 1239, 1385
BslI	CCNNNNNNNGG	8 cut(s)	235, 290, 863, 935, 1680, 1843, 1969, 2337
BsmAI	GTCTC	8 cut(s)	66, 339, 1526, 2015, 2094, 2139, 2231, 2377
BsmBI	CGTCTC	1 cut(s)	2015
BsmFI	GGGAC	5 cut(s)	553, 931, 1047, 1239, 1385
BsmI	GAATGC	1 cut(s)	1425
BsnI	GGCC	6 cut(s)	131, 239, 633, 1278, 1853, 2341
Bso31I	GGTCTC	3 cut(s)	1526, 2139, 2377
BsoBI	CYCGRG	1 cut(s)	1695
Bsp1286I	GDGCHC	4 cut(s)	565, 936, 1311, 2318
Bsp1407I	TGTACA	2 cut(s)	659, 1938
Bsp143I	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
Bsp1720I	GCTNAGC	1 cut(s)	953
Bsp19I	CCATGG	1 cut(s)	1743
BspACI	CCGC	7 cut(s)	11, 270, 1460, 1625, 1685, 2216, 2438
BspANI	GGCC	6 cut(s)	131, 239, 633, 1278, 1853, 2341
BspCNI	CTCAG	6 cut(s)	775, 922, 1389, 1445, 1879, 2326
BspDI	ATCGAT	1 cut(s)	1652
BspFNI	CGCG	1 cut(s)	2216
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	5 cut(s)	476, 1063, 1084, 1135, 1373
BspMAI	CTGCAG	2 cut(s)	1164, 1363
BspMI	ACCTGC	2 cut(s)	903, 2273
BspPI	GGATC	6 cut(s)	631, 667, 1128, 1141, 1657, 1804
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	3 cut(s)	1526, 2139, 2377
BsrDI	GCAATG	2 cut(s)	148, 1614
BsrFI	RCCGGY	1 cut(s)	1992
BsrGI	TGTACA	2 cut(s)	659, 1938
BssAI	RCCGGY	1 cut(s)	1992
BssECI	CCNNGG	7 cut(s)	289, 315, 497, 532, 1680, 1743, 2094
BssMI	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
BssT1I	CCWWGG	5 cut(s)	289, 497, 532, 1743, 2094
Bst2UI	CCWGG	3 cut(s)	677, 999, 1681
Bst4CI	ACNGT	7 cut(s)	567, 659, 1520, 1936, 2088, 2230, 2242
BstAFI	CTTAAG	1 cut(s)	371
BstAUI	TGTACA	2 cut(s)	659, 1938
BstC8I	GCNNGC	3 cut(s)	285, 804, 1359
BstDEI	CTNAG	7 cut(s)	783, 930, 953, 1376, 1432, 1887, 2334
BstDSI	CCRYGG	2 cut(s)	315, 1743
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	2216
BstKTI	GATC	8 cut(s)	466, 639, 675, 699, 1136, 1507, 1652, 1799
BstMAI	GTCTC	8 cut(s)	66, 339, 1526, 2015, 2094, 2139, 2231, 2377
BstMBI	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
BstMWI	GCNNNNNNNGC	4 cut(s)	376, 1012, 2347, 2488
BstNI	CCWGG	3 cut(s)	677, 999, 1681
BstSCI	CCNGG	3 cut(s)	675, 997, 1679
BstSFI	CTRYAG	2 cut(s)	1160, 1359
BstSLI	GKGCMC	1 cut(s)	2318
BstUI	CGCG	1 cut(s)	2216
BstV1I	GCAGC	1 cut(s)	1712
BstX2I	RGATCY	3 cut(s)	672, 1133, 1796
BstXI	CCANNNNNNTGG	2 cut(s)	485, 2007
BstYI	RGATCY	3 cut(s)	672, 1133, 1796
Bsu15I	ATCGAT	1 cut(s)	1652
Bsu36I	CCTNAGG	2 cut(s)	783, 1376
BsuI	GTATCC	1 cut(s)	2007
BsuRI	GGCC	6 cut(s)	131, 239, 633, 1278, 1853, 2341
BsuTUI	ATCGAT	1 cut(s)	1652
BtgI	CCRYGG	2 cut(s)	315, 1743
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	2 cut(s)	1089, 1642
BveI	ACCTGC	2 cut(s)	903, 2273
Cac8I	GCNNGC	3 cut(s)	285, 804, 1359
CaiI	CAGNNNCTG	2 cut(s)	1641, 1789
CciI	TCATGA	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	1992
Cfr13I	GGNCC	8 cut(s)	416, 632, 1061, 1277, 1349, 1372, 1817, 2156
ClaI	ATCGAT	1 cut(s)	1652
Csp6I	GTAC	7 cut(s)	529, 601, 660, 688, 1571, 1939, 1949
CspAI	ACCGGT	1 cut(s)	1992
CspCI	CAANNNNNGTGG	2 cut(s)	1471, 1506
CviQI	GTAC	7 cut(s)	529, 601, 660, 688, 1571, 1939, 1949
DdeI	CTNAG	7 cut(s)	783, 930, 953, 1376, 1432, 1887, 2334
DpnI	GATC	8 cut(s)	465, 638, 674, 698, 1135, 1506, 1651, 1798
DpnII	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
DriI	GACNNNNNGTC	1 cut(s)	2182
EaeI	YGGCCR	1 cut(s)	1851
Eam1105I	GACNNNNNGTC	1 cut(s)	2182
Ecl136II	GAGCTC	1 cut(s)	934
Eco130I	CCWWGG	5 cut(s)	289, 497, 532, 1743, 2094
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	936
Eco31I	GGTCTC	3 cut(s)	1526, 2139, 2377
Eco47I	GGWCC	6 cut(s)	416, 1061, 1349, 1372, 1817, 2156
Eco53kI	GAGCTC	1 cut(s)	934
Eco57I	CTGAAG	2 cut(s)	1183, 2271
Eco81I	CCTNAGG	2 cut(s)	783, 1376
Eco88I	CYCGRG	1 cut(s)	1695
EcoICRI	GAGCTC	1 cut(s)	934
EcoO109I	RGGNCCY	3 cut(s)	1061, 1372, 1817
EcoRI	GAATTC	1 cut(s)	993
EcoRII	CCWGG	3 cut(s)	675, 997, 1679
EcoT14I	CCWWGG	5 cut(s)	289, 497, 532, 1743, 2094
EcoT22I	ATGCAT	1 cut(s)	2352
EcoT38I	GRGCYC	1 cut(s)	936
ErhI	CCWWGG	5 cut(s)	289, 497, 532, 1743, 2094
Esp3I	CGTCTC	1 cut(s)	2015
FaqI	GGGAC	5 cut(s)	553, 931, 1047, 1239, 1385
FauI	CCCGC	2 cut(s)	263, 1632
FbaI	TGATCA	1 cut(s)	1504
Fnu4HI	GCNGC	2 cut(s)	1461, 1701
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	2 cut(s)	1461, 1701
FspBI	CTAG	2 cut(s)	863, 1929
GluI	GCNGC	2 cut(s)	1461, 1701
GsuI	CTGGAG	3 cut(s)	363, 579, 2029
HaeIII	GGCC	6 cut(s)	131, 239, 633, 1278, 1853, 2341
HapII	CCGG	1 cut(s)	1993
HincII	GTYRAC	4 cut(s)	411, 912, 2245, 2443
HindII	GTYRAC	4 cut(s)	411, 912, 2245, 2443
HindIII	AAGCTT	4 cut(s)	368, 377, 664, 950
HpaI	GTTAAC	1 cut(s)	2443
HpaII	CCGG	1 cut(s)	1993
HphI	GGTGA	5 cut(s)	500, 1013, 1593, 2254, 2546
Hpy166II	GTNNAC	8 cut(s)	411, 912, 1939, 1949, 2176, 2245, 2316, 2443
Hpy188I	TCNGA	7 cut(s)	328, 474, 696, 1179, 1435, 2202, 2509
Hpy8I	GTNNAC	8 cut(s)	411, 912, 1939, 1949, 2176, 2245, 2316, 2443
HpyAV	CCTTC	6 cut(s)	28, 98, 364, 1052, 1207, 1847
HpyCH4III	ACNGT	7 cut(s)	567, 659, 1520, 1936, 2088, 2230, 2242
HpyCH4IV	ACGT	3 cut(s)	89, 1110, 1594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	376, 1012, 2347, 2488
HpyF3I	CTNAG	7 cut(s)	783, 930, 953, 1376, 1432, 1887, 2334
HpySE526I	ACGT	3 cut(s)	89, 1110, 1594
Ksp22I	TGATCA	1 cut(s)	1504
KspAI	GTTAAC	1 cut(s)	2443
Kzo9I	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
LmnI	GCTCC	2 cut(s)	560, 1422
Lsp1109I	GCAGC	1 cut(s)	1712
LweI	GCATC	4 cut(s)	28, 163, 2203, 2500
MaeI	CTAG	2 cut(s)	863, 1929
MaeII	ACGT	3 cut(s)	89, 1110, 1594
MaeIII	GTNAC	6 cut(s)	90, 215, 902, 1637, 1785, 2260
MalI	GATC	8 cut(s)	465, 638, 674, 698, 1135, 1506, 1651, 1798
MboI	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
MboII	GAAGA	5 cut(s)	43, 197, 409, 1507, 2516
MflI	RGATCY	3 cut(s)	672, 1133, 1796
MhlI	GDGCHC	4 cut(s)	565, 936, 1311, 2318
MlsI	TGGCCA	1 cut(s)	1853
MluNI	TGGCCA	1 cut(s)	1853
MlyI	GAGTC	2 cut(s)	1977, 2192
MmeI	TCCRAC	2 cut(s)	1794, 2235
Mox20I	TGGCCA	1 cut(s)	1853
Mph1103I	ATGCAT	1 cut(s)	2352
MroXI	GAANNNNTTC	1 cut(s)	1103
MscI	TGGCCA	1 cut(s)	1853
MseI	TTAA	9 cut(s)	372, 453, 587, 797, 824, 968, 1212, 1473, 2442
MslI	CAYNNNNRTG	4 cut(s)	1344, 1397, 1847, 2267
Msp20I	TGGCCA	1 cut(s)	1853
MspA1I	CMGCKG	1 cut(s)	1627
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	1993
MspR9I	CCNGG	3 cut(s)	677, 999, 1681
Mva1269I	GAATGC	1 cut(s)	1425
MvaI	CCWGG	3 cut(s)	677, 999, 1681
MvnI	CGCG	1 cut(s)	2216
MwoI	GCNNNNNNNGC	4 cut(s)	376, 1012, 2347, 2488
NcoI	CCATGG	1 cut(s)	1743
NdeII	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
NlaIV	GGNNCC	5 cut(s)	476, 1063, 1084, 1135, 1373
NmeAIII	GCCGAG	1 cut(s)	915
NmuCI	GTSAC	4 cut(s)	90, 215, 1637, 2260
NsiI	ATGCAT	1 cut(s)	2352
PagI	TCATGA	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	2273
PceI	AGGCCT	1 cut(s)	131
PctI	GAATGC	1 cut(s)	1425
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	9 cut(s)	262, 311, 709, 778, 1036, 1099, 1336, 1881, 1891
PflFI	GACNNNGTC	2 cut(s)	221, 1815
PflMI	CCANNNNNTGG	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	675
PinAI	ACCGGT	1 cut(s)	1992
PkrI	GCNGC	2 cut(s)	1462, 1702
PleI	GAGTC	2 cut(s)	1977, 2191
PpsI	GAGTC	2 cut(s)	1977, 2191
PpuMI	RGGWCCY	3 cut(s)	1061, 1372, 1817
PshBI	ATTAAT	1 cut(s)	1212
Psp124BI	GAGCTC	1 cut(s)	936
Psp1406I	AACGTT	1 cut(s)	1110
Psp5II	RGGWCCY	3 cut(s)	1061, 1372, 1817
Psp6I	CCWGG	3 cut(s)	675, 997, 1679
PspGI	CCWGG	3 cut(s)	675, 997, 1679
PspN4I	GGNNCC	5 cut(s)	476, 1063, 1084, 1135, 1373
PspPI	GGNCC	8 cut(s)	416, 632, 1061, 1277, 1349, 1372, 1817, 2156
PspPPI	RGGWCCY	3 cut(s)	1061, 1372, 1817
PstI	CTGCAG	2 cut(s)	1164, 1363
PstNI	CAGNNNCTG	2 cut(s)	1641, 1789
PsuI	RGATCY	3 cut(s)	672, 1133, 1796
PsyI	GACNNNGTC	2 cut(s)	221, 1815
RsaI	GTAC	7 cut(s)	530, 602, 661, 689, 1572, 1940, 1950
RsaNI	GTAC	7 cut(s)	529, 601, 660, 688, 1571, 1939, 1949
RseI	CAYNNNNRTG	4 cut(s)	1344, 1397, 1847, 2267
SacI	GAGCTC	1 cut(s)	936
SaqAI	TTAA	9 cut(s)	372, 453, 587, 797, 824, 968, 1212, 1473, 2442
SatI	GCNGC	2 cut(s)	1461, 1701
Sau3AI	GATC	8 cut(s)	463, 636, 672, 696, 1133, 1504, 1649, 1796
Sau96I	GGNCC	8 cut(s)	416, 632, 1061, 1277, 1349, 1372, 1817, 2156
SchI	GAGTC	2 cut(s)	1977, 2192
ScrFI	CCNGG	3 cut(s)	677, 999, 1681
SduI	GDGCHC	4 cut(s)	565, 936, 1311, 2318
SfaNI	GCATC	4 cut(s)	28, 163, 2203, 2500
SfcI	CTRYAG	2 cut(s)	1160, 1359
SinI	GGWCC	6 cut(s)	416, 1061, 1349, 1372, 1817, 2156
SmiMI	CAYNNNNRTG	4 cut(s)	1344, 1397, 1847, 2267
SmlI	CTYRAG	5 cut(s)	371, 380, 1217, 1304, 1529
SmoI	CTYRAG	5 cut(s)	371, 380, 1217, 1304, 1529
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	7 cut(s)	11, 270, 1460, 1625, 1685, 2216, 2438
SspMI	CTAG	2 cut(s)	863, 1929
SstI	GAGCTC	1 cut(s)	936
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	3 cut(s)	675, 997, 1679
StyI	CCWWGG	5 cut(s)	289, 497, 532, 1743, 2094
TaaI	ACNGT	7 cut(s)	567, 659, 1520, 1936, 2088, 2230, 2242
TaiI	ACGT	3 cut(s)	92, 1113, 1597
TaqI	TCGA	3 cut(s)	1652, 2162, 2421
TatI	WGTACW	3 cut(s)	659, 1938, 1948
TauI	GCSGC	1 cut(s)	1463
TfiI	GAWTC	9 cut(s)	262, 311, 709, 778, 1036, 1099, 1336, 1881, 1891
Tru1I	TTAA	9 cut(s)	372, 453, 587, 797, 824, 968, 1212, 1473, 2442
Tru9I	TTAA	9 cut(s)	372, 453, 587, 797, 824, 968, 1212, 1473, 2442
TseFI	GTSAC	4 cut(s)	90, 215, 1637, 2260
TseI	GCWGC	1 cut(s)	1700
Tsp45I	GTSAC	4 cut(s)	90, 215, 1637, 2260
TspGWI	ACGGA	3 cut(s)	304, 1282, 2039
Tth111I	GACNNNGTC	2 cut(s)	221, 1815
Van91I	CCANNNNNTGG	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	2314
VpaK11BI	GGWCC	6 cut(s)	416, 1061, 1349, 1372, 1817, 2156
VspI	ATTAAT	1 cut(s)	1212
XcmI	CCANNNNNNNNNTGG	3 cut(s)	157, 262, 1051
XmnI	GAANNNNTTC	1 cut(s)	1103
XspI	CTAG	2 cut(s)	863, 1929
Zsp2I	ATGCAT	1 cut(s)	2352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.