Rh1CG008200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Reverse (-)
1206948 .. 1212728
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG008200.1

Sequence Viewer

Length: 549 bp
ATGGTGGCTACTCCGTTTTGGGTCGTGTGGCAAGGGTTAGGCTGGATTGGGCGGCGGTTGATGGCGGTGGAACCGTTTGGGGTTTGTGGGATCCAGGTATTCGTAGGTGGTCTGGCAGCAAGGGATTATGCAGGAGGCGGGGTTCACGGTGGGGCTGGTCGTGGGCTTCGAGGTTCAGTGATCGGCACCGACTGTGCAAACGGATACAGATTTGGGACTCGGCTTGTTGGGGCTATGACGGCGGCGACATGTTGGTCGGCGATGGCTATAGTAGGAAGGAGGAGCCTCGAAATCGAAAGGGAAAATGAAGAAGAAAAGATACTAACTGACTGGGTTTACGATTGCTACAACCAGAGGAGATTAAACAAGATGATCGGGGACGATGAGGAGGCCAGAAATGACATGAAAAGGCTGGAGAGGCTAGTAATGGTGGCAATCTGGTGCATACAAGAGGATCCATCTTTGAGACCCACCATGAAGAAGGTTACACAAATGCTCGAAGGAGTGATTGATGTATCTGTGCCTCCAAGTCCTTCTCGATCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

182

Amino Acids

20.16

Weight (kDa)

7.61

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 5 cut(s) 52, 55, 65, 138, 242
AclWI GGATC 4 cut(s) 85, 98, 449, 462
AflIII ACRYGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 93
AloI GAACNNNNNNTCC 2 cut(s) 126, 158
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 4 cut(s) 85, 98, 449, 462
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 116
BamHI GGATCC 2 cut(s) 90, 454
BanI GGYRCC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 55, 256, 466
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 267
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 3 cut(s) 53, 117, 243
BlsI GCNGC 3 cut(s) 54, 118, 244
Bme1390I CCNGG 1 cut(s) 95
BmiI GGNNCC 5 cut(s) 72, 92, 187, 284, 456
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse1I ACTGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 295, 370, 401
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 185
BslFI GGGAC 2 cut(s) 229, 392
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 229, 392
BsnI GGCC 1 cut(s) 392
Bso31I GGTCTC 1 cut(s) 460
Bsp143I GATC 5 cut(s) 90, 180, 372, 454, 539
BspACI CCGC 5 cut(s) 52, 55, 65, 138, 242
BspANI GGCC 1 cut(s) 392
BspLI GGNNCC 5 cut(s) 72, 92, 187, 284, 456
BspPI GGATC 4 cut(s) 85, 98, 449, 462
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 335
BssMI GATC 5 cut(s) 90, 180, 372, 454, 539
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 75, 149, 194
BstKTI GATC 5 cut(s) 93, 183, 375, 457, 542
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 5 cut(s) 90, 180, 372, 454, 539
BstMWI GCNNNNNNNGC 2 cut(s) 239, 418
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 90, 454
BstYI RGATCY 2 cut(s) 90, 454
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 183
CviAII CATG 3 cut(s) 249, 403, 475
DpnI GATC 5 cut(s) 92, 182, 374, 456, 541
DpnII GATC 5 cut(s) 90, 180, 372, 454, 539
DrdI GACNNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 252, 406, 478
FaiI YATR 7 cut(s) 129, 236, 250, 269, 404, 446, 476
FaqI GGGAC 2 cut(s) 229, 392
FatI CATG 3 cut(s) 248, 402, 474
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 3 cut(s) 53, 117, 243
Fsp4HI GCNGC 3 cut(s) 53, 117, 243
FspBI CTAG 1 cut(s) 422
GluI GCNGC 3 cut(s) 53, 117, 243
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 392
Hin1II CATG 3 cut(s) 252, 406, 478
HinfI GANTC 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 145, 337
Hpy188III TCNNGA 1 cut(s) 537
Hpy8I GTNNAC 2 cut(s) 145, 337
HpyAV CCTTC 4 cut(s) 270, 475, 494, 543
HpyCH4III ACNGT 3 cut(s) 75, 149, 194
HpyCH4V TGCA 3 cut(s) 131, 197, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 418
Hsp92II CATG 3 cut(s) 252, 406, 478
Kzo9I GATC 5 cut(s) 90, 180, 372, 454, 539
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 484
MalI GATC 5 cut(s) 92, 182, 374, 456, 541
MboI GATC 5 cut(s) 90, 180, 372, 454, 539
MboII GAAGA 3 cut(s) 320, 323, 490
MflI RGATCY 2 cut(s) 90, 454
MlyI GAGTC 1 cut(s) 211
MseI TTAA 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 239, 418
NdeII GATC 5 cut(s) 90, 180, 372, 454, 539
NlaIII CATG 3 cut(s) 252, 406, 478
NlaIV GGNNCC 5 cut(s) 72, 92, 187, 284, 456
NmeAIII GCCGAG 1 cut(s) 199
NspI RCATGY 1 cut(s) 252
PciI ACATGT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PkrI GCNGC 3 cut(s) 54, 118, 244
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PscI ACATGT 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 5 cut(s) 72, 92, 187, 284, 456
PsuI RGATCY 2 cut(s) 90, 454
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 3 cut(s) 53, 117, 243
Sau3AI GATC 5 cut(s) 90, 180, 372, 454, 539
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 95
SetI ASST 4 cut(s) 99, 109, 175, 486
SfcI CTRYAG 1 cut(s) 267
SsiI CCGC 5 cut(s) 52, 55, 65, 138, 242
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 75, 149, 194
TaqI TCGA 5 cut(s) 169, 288, 294, 498, 538
TauI GCSGC 2 cut(s) 55, 245
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 321, 419, 491
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 183
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.