Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3685844 .. 3698208

Gene Structure 12365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTCTGGGACTTTATCCAGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGCACAGGAAAAACTACTGGTGCTGTCTTGGAACTGAGTCTCTCATTTTCAGCCGAAAGCTCAATTGAGGAAGAGTTAAAAAGAGAAAGTACTGCTGATGTTACAACCATAATAGTAACCTATCTGGTAATGTTCCTGTATATATCTCTGACATTAGGAGATGCACCTCAAATATCTTCTTTTTACCTCCCGTCTAAGGTGAAGCCAAAGCAATGTTTTCAAGGTACGAAGGGTTTCTTGGAGAATTGGGTGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

7.86

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	193, 328
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	2 cut(s)	61, 162
AluI	AGCT	2 cut(s)	61, 162
Alw26I	GTCTC	2 cut(s)	40, 146
ApeKI	GCWGC	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	40, 146
BfaI	CTAG	2 cut(s)	27, 66
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmcAI	AGTACT	1 cut(s)	193
BmsI	GCATC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	51, 124
Bse3DI	GCAATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	51, 124
BseXI	GCAGC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	40, 146
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	355
Bso31I	GGTCTC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	51, 124
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	137, 297
BstMAI	GTCTC	2 cut(s)	40, 146
BstNSI	RCATGY	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	192, 327
CviAII	CATG	2 cut(s)	92, 360
CviJI	RGCY	4 cut(s)	61, 155, 162, 307
CviKI_1	RGCY	4 cut(s)	61, 155, 162, 307
CviQI	GTAC	2 cut(s)	192, 327
DdeI	CTNAG	2 cut(s)	137, 297
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	40
FaeI	CATG	2 cut(s)	95, 363
FaiI	YATR	6 cut(s)	93, 101, 212, 243, 245, 361
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	2 cut(s)	91, 359
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	27, 66
GluI	GCNGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	95, 363
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	87, 325
HpyCH4V	TGCA	4 cut(s)	56, 91, 266, 355
HpyF3I	CTNAG	2 cut(s)	137, 297
Hsp92II	CATG	2 cut(s)	95, 363
LmnI	GCTCC	2 cut(s)	5, 13
LpnPI	CCDG	6 cut(s)	24, 64, 93, 105, 212, 251
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	27, 66
MaeIII	GTNAC	2 cut(s)	202, 217
MboII	GAAGA	2 cut(s)	185, 270
MfeI	CAATTG	1 cut(s)	165
MluCI	AATT	2 cut(s)	165, 346
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	163, 279, 299
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	179
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	95, 363
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	359
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
RsaI	GTAC	2 cut(s)	193, 328
RsaNI	GTAC	2 cut(s)	192, 327
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	1 cut(s)	148
SetI	ASST	8 cut(s)	36, 63, 164, 224, 271, 291, 303, 328
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	2 cut(s)	165, 346
SspMI	CTAG	2 cut(s)	27, 66
TasI	AATT	2 cut(s)	165, 346
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	27, 66
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.