Rh1CG036400

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Reverse (-)
7105714 .. 7109546
3833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG036400.1

Sequence Viewer

Length: 1056 bp
ATGGCCGTTGAATTACCGCGTGGATCTCTTCTATCCTCTTTTCTCTCTGTATTGTTGGATGGAATTGCTTCTGCTGAGTTGGTTGACTTTATTCGGAGGCAGAACAAAACACCCGGACTGCTCAAGAAGTTGAAGATGAAGTTGCTGGCAGTCGATGAAGTGGTCGATGATGCTGAGGAGAGGCAGATCAGAGAGTCAGCTGTGAGGGATTGGCTTGACGAGCTTACAGACACTCTCTATCATGGTGACGACCTGCTCGATGAGATCCGGACAGAGGCTCTGCGACGCAAGCTGGAAGGTGGTCTATCTGGAGAGAGCAGCGCAACTACTTCGGTGAAGGAGGTTTTCTCTGTTCCTGGTAAATTTGAAAAAACTGTGGATCAAAAGCTTGTGGGGATTCTTGAAAGATCAGATTTTATTTTGAACCGAATAGCGGCACTTGCTTTGAAAATCCGTGGCGTTAAAGATAGACCACGAGCAAGACTACTCCCAACTTGTTCTCTGGTAGATGAGTCTCGCATCTATGGAAGGGAAAAGGAGAAGGAGACCATCATTAGCATGTTGCTGTCACGGGATGCAACGGATGATAGAATTGGTGTCATTCCTATTAAGTGGTCTTATGTTGACAGTAATCATGAAGAAGGCGGAGTCTTTCCTAATCTTTGTAAGCTGAATCTGGAGAACTGTCCAGAGCTAACAGACATTGTACCATTAGACAACTTCCCAAAGCTTGAAGATGTGAAATTGTTGGGTCTGAAGTCCTTTGCCGGGAAACTGCTTCCTACCTCTCTCACTTGTCTCTCCATCTCCAACCTTCCAAATGTTATGACCTTGGAGGAGTCGAGGTGCTTCAACTCTCTTCAGTCGTTATTCATTGCTAGGTTGCCCAAACTTCAGAGCTTGCCAGAAGAAACTTCTTCTCTTTCTCGAGATCAATGGAGAAGAGATATGATATATGCTATATATGATGATGAGTCCCCATTTCTCTCTAAGATTTTGTACTTCAGCACTTGCCATCCCATTTGGATTTTCTCGGCAATCATTTACCGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

351

Amino Acids

39.67

Weight (kDa)

5.33

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 102 9.9e-17 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AccII CGCG 1 cut(s) 19
AccIII TCCGGA 1 cut(s) 267
AciI CCGC 3 cut(s) 17, 434, 645
AclWI GGATC 3 cut(s) 31, 259, 387
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 4 cut(s) 776, 845, 878, 988
AfaI GTAC 2 cut(s) 708, 1001
AfiI CCNNNNNNNGG 3 cut(s) 274, 433, 768
AgsI TTSAA 8 cut(s) 11, 133, 368, 404, 424, 448, 734, 853
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 8 cut(s) 200, 223, 292, 388, 670, 694, 730, 900
AluI AGCT 8 cut(s) 200, 223, 292, 388, 670, 694, 730, 900
Alw26I GTCTC 3 cut(s) 519, 539, 803
AlwI GGATC 3 cut(s) 31, 259, 387
Ama87I CYCGRG 1 cut(s) 927
Aor13HI TCCGGA 1 cut(s) 267
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 323
AsuC2I CCSGG 3 cut(s) 114, 769, 1049
AsuHPI GGTGA 2 cut(s) 257, 346
AvaI CYCGRG 1 cut(s) 927
BauI CACGAG 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 330
BccI CCATC 4 cut(s) 53, 557, 812, 1023
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 3 cut(s) 114, 769, 1049
BcoDI GTCTC 3 cut(s) 519, 539, 803
BfaI CTAG 1 cut(s) 879
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 2 cut(s) 319, 435
BlsI GCNGC 2 cut(s) 320, 436
Bme1390I CCNGG 4 cut(s) 114, 357, 769, 1049
BmeT110I CYCGRG 1 cut(s) 927
BmrFI CCNGG 4 cut(s) 114, 357, 769, 1049
BmsI GCATC 3 cut(s) 160, 528, 565
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 2 cut(s) 330, 698
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 3 cut(s) 114, 769, 1049
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 454, 831, 1048
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 433, 768
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 267
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 454, 831, 1048
BseGI GGATG 4 cut(s) 64, 580, 589, 1015
BseLI CCNNNNNNNGG 3 cut(s) 274, 433, 768
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 2 cut(s) 66, 165
BseRI GAGGAG 2 cut(s) 191, 851
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 927
BsiSI CCGG 4 cut(s) 114, 268, 768, 1048
BslFI GGGAC 1 cut(s) 961
BslI CCNNNNNNNGG 3 cut(s) 274, 433, 768
BsmAI GTCTC 3 cut(s) 519, 539, 803
BsmFI GGGAC 1 cut(s) 961
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 927
Bsp13I TCCGGA 1 cut(s) 267
Bsp143I GATC 6 cut(s) 23, 186, 264, 379, 407, 931
BspACI CCGC 3 cut(s) 17, 434, 645
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 67, 166
BspEI TCCGGA 1 cut(s) 267
BspFNI CGCG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 3 cut(s) 31, 259, 387
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 873
BssECI CCNNGG 3 cut(s) 454, 831, 1048
BssMI GATC 6 cut(s) 23, 186, 264, 379, 407, 931
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 831
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 376, 629, 686
Bst6I CTCTTC 3 cut(s) 33, 864, 937
BstC8I GCNNGC 3 cut(s) 147, 290, 902
BstDEI CTNAG 3 cut(s) 75, 174, 990
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 4 cut(s) 64, 580, 589, 1015
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 6 cut(s) 26, 189, 267, 382, 410, 934
BstMAI GTCTC 3 cut(s) 519, 539, 803
BstMBI GATC 6 cut(s) 23, 186, 264, 379, 407, 931
BstMWI GCNNNNNNNGC 3 cut(s) 220, 289, 440
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 112, 355, 767, 1047
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 23, 264
BstYI RGATCY 2 cut(s) 23, 264
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 4 cut(s) 64, 580, 589, 1015
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 3 cut(s) 147, 290, 902
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 323
CseI GACGC 1 cut(s) 294
Csp6I GTAC 2 cut(s) 707, 1000
CviAII CATG 3 cut(s) 242, 559, 635
CviQI GTAC 2 cut(s) 707, 1000
DdeI CTNAG 3 cut(s) 75, 174, 990
DpnI GATC 6 cut(s) 25, 188, 266, 381, 409, 933
DpnII GATC 6 cut(s) 23, 186, 264, 379, 407, 931
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 33, 864, 937
EarI CTCTTC 3 cut(s) 33, 864, 937
EciI GGCGGA 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 831
Eco31I GGTCTC 1 cut(s) 539
Eco57I CTGAAG 4 cut(s) 776, 845, 878, 988
Eco88I CYCGRG 1 cut(s) 927
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 831
FaeI CATG 3 cut(s) 245, 562, 638
FaqI GGGAC 1 cut(s) 961
FatI CATG 3 cut(s) 241, 558, 634
Fnu4HI GCNGC 2 cut(s) 319, 435
FokI GGATG 4 cut(s) 71, 587, 596, 1002
Fsp4HI GCNGC 2 cut(s) 319, 435
FspBI CTAG 1 cut(s) 879
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 319, 435
GsuI CTGGAG 2 cut(s) 330, 698
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 114, 268, 768, 1048
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 323
Hin1II CATG 3 cut(s) 245, 562, 638
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 2 cut(s) 85, 625
HindII GTYRAC 2 cut(s) 85, 625
HindIII AAGCTT 2 cut(s) 386, 728
HinfI GANTC 7 cut(s) 194, 397, 512, 648, 673, 839, 974
HpaII CCGG 4 cut(s) 114, 268, 768, 1048
HphI GGTGA 2 cut(s) 257, 346
Hpy166II GTNNAC 2 cut(s) 85, 625
Hpy188I TCNGA 5 cut(s) 96, 191, 412, 756, 897
Hpy188III TCNNGA 9 cut(s) 124, 268, 309, 401, 635, 677, 689, 927, 929
Hpy8I GTNNAC 2 cut(s) 85, 625
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 6 cut(s) 290, 331, 522, 535, 635, 824
HpyCH4III ACNGT 3 cut(s) 376, 629, 686
HpyCH4V TGCA 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 289, 440
HpyF3I CTNAG 3 cut(s) 75, 174, 990
Hsp92II CATG 3 cut(s) 245, 562, 638
HspAI GCGC 1 cut(s) 321
Kpn2I TCCGGA 1 cut(s) 267
Kzo9I GATC 6 cut(s) 23, 186, 264, 379, 407, 931
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 3 cut(s) 160, 528, 565
MaeI CTAG 1 cut(s) 879
MaeIII GTNAC 2 cut(s) 245, 567
MalI GATC 6 cut(s) 25, 188, 266, 381, 409, 933
MboI GATC 6 cut(s) 23, 186, 264, 379, 407, 931
MboII GAAGA 8 cut(s) 20, 145, 650, 746, 851, 909, 920, 954
MflI RGATCY 2 cut(s) 23, 264
MluCI AATT 5 cut(s) 11, 63, 362, 591, 743
MlyI GAGTC 5 cut(s) 203, 521, 657, 848, 983
MmeI TCCRAC 2 cut(s) 36, 834
MroI TCCGGA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 2 cut(s) 462, 609
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 114, 268, 768, 1048
MspR9I CCNGG 4 cut(s) 114, 357, 769, 1049
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 3 cut(s) 220, 289, 440
NciI CCSGG 3 cut(s) 114, 769, 1049
NdeII GATC 6 cut(s) 23, 186, 264, 379, 407, 931
NlaIII CATG 3 cut(s) 245, 562, 638
NmeAIII GCCGAG 1 cut(s) 1013
NmuCI GTSAC 2 cut(s) 245, 567
NspI RCATGY 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 927
PagI TCATGA 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 397, 673
PkrI GCNGC 2 cut(s) 320, 436
PleI GAGTC 5 cut(s) 202, 520, 656, 847, 982
PpsI GAGTC 5 cut(s) 202, 520, 656, 847, 982
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 23, 264
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 708, 1001
RsaNI GTAC 2 cut(s) 707, 1000
RseI CAYNNNNRTG 1 cut(s) 557
SaqAI TTAA 2 cut(s) 462, 609
SatI GCNGC 2 cut(s) 319, 435
Sau3AI GATC 6 cut(s) 23, 186, 264, 379, 407, 931
SchI GAGTC 5 cut(s) 203, 521, 657, 848, 983
ScrFI CCNGG 4 cut(s) 114, 357, 769, 1049
SfaNI GCATC 3 cut(s) 160, 528, 565
Sfr274I CTCGAG 1 cut(s) 927
SlaI CTCGAG 1 cut(s) 927
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 2 cut(s) 122, 927
SmoI CTYRAG 2 cut(s) 122, 927
Sse9I AATT 5 cut(s) 11, 63, 362, 591, 743
SsiI CCGC 3 cut(s) 17, 434, 645
SspMI CTAG 1 cut(s) 879
StyD4I CCNGG 4 cut(s) 112, 355, 767, 1047
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 3 cut(s) 376, 629, 686
TaqI TCGA 5 cut(s) 153, 165, 258, 842, 928
TasI AATT 5 cut(s) 11, 63, 362, 591, 743
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 2 cut(s) 397, 673
Tru1I TTAA 2 cut(s) 462, 609
Tru9I TTAA 2 cut(s) 462, 609
TseFI GTSAC 2 cut(s) 245, 567
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 2 cut(s) 245, 567
TspDTI ATGAA 4 cut(s) 152, 171, 651, 862
TspGWI ACGGA 2 cut(s) 443, 596
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.