Rh1CG046000
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Forward (+)
8706691 .. 8707438
748 bp
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UTR
Exon/CDS
Intron
Rh1CG046000.1

Sequence Viewer

Length: 294 bp
ATGGAGGCGATCGAAGAGTTGTTGCAACTGTCAGACTCGATGTGCCAAGGCCAGGCCATCCTCGCCGACGAAGACGTTGACGAAAACTCTACCGCCTATTCTTGTCACTCCTCAACTTTCCTCAACGTCGTCACTCTCGGCAATGTTTATGTTTCAGGAAGCCAAGTTCATCCAGCTCAGATTTTGTTTGGGGTTCTGTACATTATAAACTTGGGAATCAATTTGTACATCTATGTGAAGACTGATGTGGTAAGCAAAATATTTGAGCTGAGTTGTGGAAGTTTCGAAATGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

4.05

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AciI CCGC 1 cut(s) 93
AfaI GTAC 2 cut(s) 200, 227
AfiI CCNNNNNNNGG 1 cut(s) 52
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 2 cut(s) 176, 268
AluI AGCT 2 cut(s) 176, 268
AoxI GGCC 2 cut(s) 49, 54
AsuII TTCGAA 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 78, 245
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 2 cut(s) 78, 245
Bpu14I TTCGAA 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 57, 169
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 191, 260
BseRI GAGGAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 51, 56
BsiEI CGRYCG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 2 cut(s) 51, 56
Bsp119I TTCGAA 1 cut(s) 285
Bsp1407I TGTACA 2 cut(s) 198, 225
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 51, 56
BspCNI CTCAG 2 cut(s) 190, 261
BspT104I TTCGAA 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 148
BsrGI TGTACA 2 cut(s) 198, 225
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 9
BstAUI TGTACA 2 cut(s) 198, 225
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 177, 269
BstF5I GGATG 2 cut(s) 57, 169
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV2I GAAGAC 2 cut(s) 78, 245
BsuRI GGCC 2 cut(s) 51, 56
BtsCI GGATG 2 cut(s) 57, 169
Csp6I GTAC 2 cut(s) 199, 226
CviJI RGCY 5 cut(s) 51, 56, 162, 176, 268
CviKI_1 RGCY 5 cut(s) 51, 56, 162, 176, 268
CviQI GTAC 2 cut(s) 199, 226
DdeI CTNAG 2 cut(s) 177, 269
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 3 cut(s) 150, 206, 234
FokI GGATG 2 cut(s) 44, 156
HaeIII GGCC 2 cut(s) 51, 56
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 35, 216
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 34, 180
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 71, 131
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 2 cut(s) 75, 126
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 177, 269
HpySE526I ACGT 2 cut(s) 75, 126
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 38, 65, 141, 186
MaeII ACGT 2 cut(s) 75, 126
MaeIII GTNAC 2 cut(s) 104, 130
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 26, 83, 250
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 71, 121, 131
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 104, 130
NspV TTCGAA 1 cut(s) 285
PfeI GAWTC 1 cut(s) 216
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 2 cut(s) 200, 227
RsaNI GTAC 2 cut(s) 199, 226
RseI CAYNNNNRTG 1 cut(s) 233
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 53
SetI ASST 4 cut(s) 78, 129, 178, 270
SfuI TTCGAA 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 2 cut(s) 78, 129
TaqI TCGA 3 cut(s) 12, 38, 285
TasI AATT 1 cut(s) 220
TatI WGTACW 2 cut(s) 198, 225
TfiI GAWTC 1 cut(s) 216
TseFI GTSAC 2 cut(s) 104, 130
Tsp45I GTSAC 2 cut(s) 104, 130
TspDTI ATGAA 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.