Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21271145 .. 21274285

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTATTTACTGTTTTCTTTTACCTCTTTTGTTTTACACAGATCATTGCTGGTGATCCAGAATGTGTTAGTGAGACATGGATGAGTAATGCATATAGTTTCAGGATGGTGATTTGGGAGATGGTGACTGGTGAGGCAGCCTACTCCGCATGTTCACCGGTCCAAGCAGCAGTTGGGATAGCTGCCTGTGGCCTCAGACCTGAGATTCCAAAGGACTGTCGACAAATGCTGAGATCGTTGATGACCAGACCAAGTGCTGGAACAACTCCCCCTCAAAGCGTCTTCAGTTCTCTGAAATTCTATCACTATTGCTGTGGACCAACAACAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

6.52

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	157
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	137, 167, 182
ApoI	RAATTY	1 cut(s)	296
AsiGI	ACCGGT	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	160, 317
AsuHPI	GGTGA	5 cut(s)	65, 121, 136, 143, 147
AvaII	GGWCC	2 cut(s)	160, 317
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	149, 169, 179
BccI	CCATC	2 cut(s)	100, 115
BcoDI	GTCTC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	138, 168, 183
BlsI	GCNGC	3 cut(s)	139, 169, 184
Bme18I	GGWCC	2 cut(s)	160, 317
BmgT120I	GGNCC	2 cut(s)	160, 317
BpiI	GAAGAC	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	87, 111
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	192, 208, 221
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	149, 169, 179
BshFI	GGCC	1 cut(s)	192
BshTI	ACCGGT	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	42, 55, 233
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	3 cut(s)	193, 207, 222
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	3 cut(s)	42, 55, 233
Bst4CI	ACNGT	2 cut(s)	13, 218
BstDEI	CTNAG	3 cut(s)	194, 201, 230
BstF5I	GGATG	2 cut(s)	87, 111
BstKTI	GATC	3 cut(s)	45, 58, 236
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	42, 55, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	149, 169, 179
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	87, 111
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	160, 317
CseI	GACGC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	157
CviAII	CATG	2 cut(s)	78, 150
CviJI	RGCY	3 cut(s)	140, 182, 192
CviKI_1	RGCY	3 cut(s)	140, 182, 192
DdeI	CTNAG	3 cut(s)	194, 201, 230
DpnI	GATC	3 cut(s)	44, 57, 235
DpnII	GATC	3 cut(s)	42, 55, 233
Eco47I	GGWCC	2 cut(s)	160, 317
Eco57I	CTGAAG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	94
FaeI	CATG	2 cut(s)	81, 153
FaiI	YATR	4 cut(s)	79, 94, 96, 151
FatI	CATG	2 cut(s)	77, 149
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	138, 168, 183
FokI	GGATG	2 cut(s)	94, 118
Fsp4HI	GCNGC	3 cut(s)	138, 168, 183
GluI	GCNGC	3 cut(s)	138, 168, 183
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	81, 153
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	5 cut(s)	65, 121, 136, 143, 147
Hpy166II	GTNNAC	3 cut(s)	155, 221, 317
Hpy188I	TCNGA	2 cut(s)	197, 294
Hpy188III	TCNNGA	2 cut(s)	59, 103
Hpy8I	GTNNAC	3 cut(s)	155, 221, 317
HpyCH4III	ACNGT	2 cut(s)	13, 218
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	194, 201, 230
Hsp92II	CATG	2 cut(s)	81, 153
Kzo9I	GATC	3 cut(s)	42, 55, 233
LpnPI	CCDG	9 cut(s)	36, 72, 88, 114, 171, 199, 213, 243, 259
Lsp1109I	GCAGC	3 cut(s)	149, 169, 179
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	44, 57, 235
MboI	GATC	3 cut(s)	42, 55, 233
MboII	GAAGA	1 cut(s)	274
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	4 cut(s)	35, 127, 203, 282
Mph1103I	ATGCAT	1 cut(s)	94
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	3 cut(s)	42, 55, 233
NlaIII	CATG	2 cut(s)	81, 153
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	139, 169, 184
PspPI	GGNCC	2 cut(s)	160, 317
SalI	GTCGAC	1 cut(s)	219
SatI	GCNGC	3 cut(s)	138, 168, 183
Sau3AI	GATC	3 cut(s)	42, 55, 233
Sau96I	GGNCC	2 cut(s)	160, 317
SetI	ASST	3 cut(s)	27, 184, 202
SinI	GGWCC	2 cut(s)	160, 317
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	13, 218
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	137, 167, 182
Tsp45I	GTSAC	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	160, 317
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.