Rh1CG130000

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Reverse (-)
28561968 .. 28562676
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG130000.1

Sequence Viewer

Length: 333 bp
ATGGCTAGCGGATTCAAGGACAAATTGGGTGAAGGAGGCTTTGGCACCGTGTACAAGGCAAAACTCCGCAGTGGTCGCCTTGTGGCCATCAAGATTTTAAGCTTTTGTGTTGACCGTTCAAACCGTGCACTTGTTTATGATTTCATGTCAAATGACTCTCTTGACAAGTACATTTTTTCTCAGCAAGGTGATATCTCCTTAAGCTCAAGGCTATACCCATTGGACAACAGCATTGTGTCTTTGACTGCAGCAAGAGGAACCATAGGATACATGGCTCCAGAGTTATTCTACAAAAACTTTGGAGGTGTATCAAACAAAGCGGGATGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

110

Amino Acids

11.99

Weight (kDa)

9.36

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 3 cut(s) 9, 67, 320
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 2 cut(s) 53, 170
AflII CTTAAG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 16, 120
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 2 cut(s) 102, 204
AluI AGCT 2 cut(s) 102, 204
Alw21I GWGCWC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 126
AoxI GGCC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 41, 200
AsuNHI GCTAGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 95
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 46, 259, 276
BmtI GCTAGC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 190
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 130
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 51
BspACI CCGC 3 cut(s) 9, 67, 320
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 46, 259, 276
BspMAI CTGCAG 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 49, 116, 125
BstAFI CTTAAG 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 329
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 52, 169
CviAII CATG 2 cut(s) 145, 271
CviJI RGCY 7 cut(s) 5, 39, 86, 102, 204, 211, 275
CviKI_1 RGCY 7 cut(s) 5, 39, 86, 102, 204, 211, 275
CviQI GTAC 2 cut(s) 52, 169
DdeI CTNAG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 84
Eco32I GATATC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 193
FaeI CATG 2 cut(s) 148, 274
FaiI YATR 7 cut(s) 138, 146, 214, 263, 272, 329, 331
FatI CATG 2 cut(s) 144, 270
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 2 cut(s) 148, 274
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 2 cut(s) 12, 155
HphI GGTGA 2 cut(s) 41, 200
Hpy166II GTNNAC 3 cut(s) 52, 112, 128
Hpy188III TCNNGA 3 cut(s) 91, 161, 278
Hpy8I GTNNAC 3 cut(s) 52, 112, 128
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 49, 116, 125
HpyCH4V TGCA 2 cut(s) 128, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 148, 274
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 1 cut(s) 291
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 1 cut(s) 23
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 29, 248, 296
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 98, 200
Msp20I TGGCCA 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 75
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 148, 274
NlaIV GGNNCC 3 cut(s) 46, 259, 276
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 46, 259, 276
PstI CTGCAG 1 cut(s) 250
RsaI GTAC 2 cut(s) 53, 170
RsaNI GTAC 2 cut(s) 52, 169
SaqAI TTAA 2 cut(s) 98, 200
SatI GCNGC 1 cut(s) 249
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 104, 190, 206, 307
SfcI CTRYAG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 199, 205
SmoI CTYRAG 2 cut(s) 199, 205
Sse9I AATT 1 cut(s) 23
SsiI CCGC 3 cut(s) 9, 67, 320
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 49, 116, 125
TasI AATT 1 cut(s) 23
TatI WGTACW 2 cut(s) 51, 168
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 98, 200
Tru9I TTAA 2 cut(s) 98, 200
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.