Rh1CG188300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Reverse (-)
41037028 .. 41046947
9920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG188300.1

Sequence Viewer

Length: 651 bp
ATGGTCAGATTTAAGCTTAAACTCAGACAGAAGATGCAATTGATTAGCCCAGAAATAGATCTATGGCTCCCAAAGGATTTGGACGTGGTTGTGGGCCAAATAGTGAAAACTCTGAAGATGGTGATCATCGAAAACATACAACGAAAACTTCAAGAAAACAAAGATGTTGATGTGGAGAATGTCCTATCTATTCTTCCCTTGAGGCAGAGAAGATGTATCTTGAGCCTTCTCAGCTTAACTGCGTTAAAGAAAACTTGCAGTCATGCAGTCATCTTCTCCGACTTTCCCCATCCAAGCTTGCTTTGTTTTCTGATTTGCTCCAAACAGGAGGGTGGTGAAAGTGAGTTTAGTGATGACTATAGGCAGATGAGTGGGAGTGGGTGTCTCAGAATCAAACCCACCTCAGCTATCAATCTTCACAAGCACTTTCGTGGGAGTGTGCCATTATTTCAAGATATGGATGAGAAAGTGTTGAATGCAATATGTGCACATCTTAAGCCAGTGATATATGCCGAAGACAACTATATTCTTCAGGAGGGGGAACCATTAGAGAAGATGCTCTTCATCACCCAAGGCACTGCATGGTCCTATACCACTATAAGTGAAACAAGTACTACTGTGTCGTCAAAATTGTTGGAAAACGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

216

Amino Acids

24.61

Weight (kDa)

6.95

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 134, 515
AfaI GTAC 1 cut(s) 613
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 3 cut(s) 152, 452, 475
AjiI CACGTC 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 4 cut(s) 16, 234, 297, 407
AluI AGCT 4 cut(s) 16, 234, 297, 407
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 389
Alw44I GTGCAC 1 cut(s) 486
AoxI GGCC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 94, 585
AsuHPI GGTGA 3 cut(s) 133, 347, 559
AvaII GGWCC 1 cut(s) 585
BaeGI GKGCMC 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 490
BbvCI CCTCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 112, 297
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 358
BfrI CTTAAG 1 cut(s) 494
BglII AGATCT 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 613
Bme18I GGWCC 1 cut(s) 585
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 2 cut(s) 94, 585
BmiI GGNNCC 2 cut(s) 68, 543
BmsI GCATC 2 cut(s) 24, 546
BpiI GAAGAC 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 403
BpuEI CTTGAG 2 cut(s) 220, 241
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bse1I ACTGG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 289, 466
BseJI GATNNNNATC 1 cut(s) 122
BseMII CTCAG 4 cut(s) 37, 244, 400, 417
BseNI ACTGG 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 490
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 2 cut(s) 58, 123
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 4 cut(s) 36, 243, 399, 416
BspLI GGNNCC 2 cut(s) 68, 543
BspQI GCTCTTC 1 cut(s) 566
BspTI CTTAAG 1 cut(s) 494
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 2 cut(s) 58, 123
BssT1I CCWWGG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 1 cut(s) 566
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 4 cut(s) 23, 230, 386, 403
BstF5I GGATG 2 cut(s) 289, 466
BstKTI GATC 2 cut(s) 61, 126
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 58, 123
BstMWI GCNNNNNNNGC 2 cut(s) 231, 485
BstSFI CTRYAG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 96
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 289, 466
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 507, 576
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 94, 585
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 263, 582
CviJI RGCY 9 cut(s) 16, 48, 67, 96, 225, 234, 297, 407, 499
CviKI_1 RGCY 9 cut(s) 16, 48, 67, 96, 225, 234, 297, 407, 499
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 4 cut(s) 23, 230, 386, 403
DpnI GATC 2 cut(s) 60, 125
DpnII GATC 2 cut(s) 58, 123
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 585
Eco57I CTGAAG 2 cut(s) 134, 515
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 2 cut(s) 266, 585
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FatI CATG 2 cut(s) 262, 581
FbaI TGATCA 1 cut(s) 123
FokI GGATG 2 cut(s) 276, 473
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 2 cut(s) 266, 585
HindIII AAGCTT 2 cut(s) 14, 295
HinfI GANTC 1 cut(s) 390
HphI GGTGA 3 cut(s) 133, 347, 559
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 6 cut(s) 8, 26, 114, 280, 312, 389
Hpy188III TCNNGA 4 cut(s) 152, 220, 452, 533
Hpy8I GTNNAC 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 6 cut(s) 37, 258, 266, 479, 488, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 485
HpyF3I CTNAG 4 cut(s) 23, 230, 386, 403
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 266, 585
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 58, 123
LguI GCTCTTC 1 cut(s) 566
LmnI GCTCC 2 cut(s) 72, 323
LpnPI CCDG 4 cut(s) 63, 311, 513, 518
LweI GCATC 2 cut(s) 24, 546
MaeII ACGT 1 cut(s) 84
MalI GATC 2 cut(s) 60, 125
MboI GATC 2 cut(s) 58, 123
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 2 cut(s) 38, 629
MmeI TCCRAC 2 cut(s) 303, 615
MnlI CCTC 4 cut(s) 195, 322, 412, 529
MseI TTAA 5 cut(s) 12, 18, 236, 245, 495
MslI CAYNNNNRTG 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 494
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 2 cut(s) 231, 485
NdeII GATC 2 cut(s) 58, 123
NlaIII CATG 2 cut(s) 266, 585
NlaIV GGNNCC 2 cut(s) 68, 543
OliI CACNNNNGTG 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 566
PctI GAATGC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 68, 543
PspPI GGNCC 2 cut(s) 94, 585
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 5 cut(s) 12, 18, 236, 245, 495
Sau3AI GATC 2 cut(s) 58, 123
Sau96I GGNCC 2 cut(s) 94, 585
ScaI AGTACT 1 cut(s) 613
SduI GDGCHC 1 cut(s) 490
SetI ASST 6 cut(s) 18, 87, 236, 299, 404, 409
SfaNI GCATC 2 cut(s) 24, 546
SfcI CTRYAG 1 cut(s) 358
SinI GGWCC 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 3 cut(s) 199, 220, 494
SmoI CTYRAG 3 cut(s) 199, 220, 494
Sse9I AATT 2 cut(s) 38, 629
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 38, 629
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 5 cut(s) 12, 18, 236, 245, 495
Tru9I TTAA 5 cut(s) 12, 18, 236, 245, 495
TscAI CASTG 2 cut(s) 507, 583
TspDTI ATGAA 1 cut(s) 553
TspRI CASTG 2 cut(s) 507, 583
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.