Rh1CG207200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Forward (+)
44897177 .. 44897925
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG207200.1

Sequence Viewer

Length: 210 bp
ATGCTGCCTACCTCCCTCACTTACCTCTCCTTCTCCAATCTCCCCAGTGTTATGAGGATGGATGGCAAGGAGCTGAACCGCCTCATTTCTCTTGAAGATTTGACGATATTGGACTGCCCTGAGCTCCGGACACCAGGAAGCCAACCAGCTAGCTGTAAGTTGCAGGTAATGAAAGTTGTTCTCTCTGATCATGTACATTGGATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

6.01

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 195
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 4 cut(s) 73, 124, 149, 153
AluI AGCT 4 cut(s) 73, 124, 149, 153
Alw21I GWGCWC 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 4
AsuNHI GCTAGC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 2 cut(s) 52, 56
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 39
BmtI GCTAGC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 3 cut(s) 63, 67, 207
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 126
Bsp13I TCCGGA 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 193
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 63, 67, 207
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BtsCI GGATG 3 cut(s) 63, 67, 207
BtsIMutI CAGTG 1 cut(s) 52
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 191
CviJI RGCY 5 cut(s) 73, 124, 141, 149, 153
CviKI_1 RGCY 5 cut(s) 73, 124, 141, 149, 153
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 1 cut(s) 194
FaiI YATR 2 cut(s) 53, 192
FatI CATG 1 cut(s) 190
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 70, 74
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 127
Hin1II CATG 1 cut(s) 194
HpaII CCGG 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 92, 127, 207
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 70, 129
LpnPI CCDG 7 cut(s) 58, 120, 132, 140, 147, 149, 159
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 126
MnlI CCTC 5 cut(s) 22, 26, 35, 48, 92
MroI TCCGGA 1 cut(s) 126
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
NdeII GATC 1 cut(s) 187
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 14, 27, 75, 126, 151, 155, 168
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 133
TatI WGTACW 1 cut(s) 193
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 52
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.