Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

49414452 .. 49415121

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGAGAGGCCCGACGACGAGGAGACTGAACCCGGCGTTGTTTCTCACGCGCCATCCAAGGTCTCGTGGGCGCGGTCCCTCAGCGTGGCCTCCAGCAACTCCGACAACACCAGCTACAATCGTCGGTCTGAGTTCAACTTCGACTCCGGACTCGGCGGCCTTCTACTCCTTACTGAGTCAGCTCCGGGCCAATGATCTGAGGGTGTTCGCCCTCTCTGAGCTCAAATCAGCGAGTTGCGGGTTCAGTCGGGCCTTGCTGATCGACGAGGGAGGGTTTAGGGTATTTGGGCCTCGAATTCCGGCTGAGATGGACGTGCACCACTGTCATCTTCGTCCTCGGCAAGAGGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.82

Weight (kDa)

11.25

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	52, 75
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	3 cut(s)	75, 158, 240
AcsI	RAATTY	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	3 cut(s)	116, 184, 223
AluI	AGCT	3 cut(s)	116, 184, 223
Alw21I	GWGCWC	2 cut(s)	225, 321
Alw26I	GTCTC	2 cut(s)	19, 69
Alw44I	GTGCAC	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	6 cut(s)	10, 89, 159, 189, 252, 290
ApaLI	GTGCAC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	54, 75
AspS9I	GGNCC	5 cut(s)	11, 77, 189, 252, 290
AsuC2I	CCSGG	2 cut(s)	35, 188
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	225, 321
BbvCI	CCTCAGC	1 cut(s)	82
BccI	CCATC	2 cut(s)	63, 304
BcnI	CCSGG	2 cut(s)	35, 188
BcoDI	GTCTC	2 cut(s)	19, 69
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	35, 188
Bme18I	GGWCC	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	5 cut(s)	11, 77, 189, 252, 290
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	35, 188
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	2 cut(s)	35, 188
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	59, 338
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	59, 338
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	6 cut(s)	96, 122, 167, 191, 210, 297
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	52, 75
BshFI	GGCC	6 cut(s)	12, 91, 161, 191, 254, 292
BsiHKAI	GWGCWC	2 cut(s)	225, 321
BsiSI	CCGG	4 cut(s)	35, 149, 187, 302
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	19, 69
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	6 cut(s)	12, 91, 161, 191, 254, 292
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	225, 321
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	196, 261
BspACI	CCGC	3 cut(s)	75, 158, 240
BspANI	GGCC	6 cut(s)	12, 91, 161, 191, 254, 292
BspCNI	CTCAG	6 cut(s)	95, 123, 168, 192, 211, 298
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	52, 75
BspLI	GGNNCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	59, 338
BssMI	GATC	2 cut(s)	196, 261
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	326
BstDEI	CTNAG	6 cut(s)	82, 131, 176, 200, 219, 306
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	2 cut(s)	52, 75
BstHHI	GCGC	2 cut(s)	54, 75
BstKTI	GATC	2 cut(s)	199, 264
BstMAI	GTCTC	2 cut(s)	19, 69
BstMBI	GATC	2 cut(s)	196, 261
BstSCI	CCNGG	2 cut(s)	33, 186
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	2 cut(s)	52, 75
BsuRI	GGCC	6 cut(s)	12, 91, 161, 191, 254, 292
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	322
CfoI	GCGC	2 cut(s)	54, 75
Cfr13I	GGNCC	5 cut(s)	11, 77, 189, 252, 290
DdeI	CTNAG	6 cut(s)	82, 131, 176, 200, 219, 306
DpnI	GATC	2 cut(s)	198, 263
DpnII	GATC	2 cut(s)	196, 261
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	59
FaqI	GGGAC	1 cut(s)	63
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	159
GlaI	GCGC	2 cut(s)	53, 74
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	6 cut(s)	12, 91, 161, 191, 254, 292
HapII	CCGG	4 cut(s)	35, 149, 187, 302
HhaI	GCGC	2 cut(s)	54, 75
Hin6I	GCGC	2 cut(s)	52, 73
HinP1I	GCGC	2 cut(s)	52, 73
HinfI	GANTC	3 cut(s)	145, 152, 178
HpaII	CCGG	4 cut(s)	35, 149, 187, 302
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	105, 132, 201, 220
Hpy188III	TCNNGA	2 cut(s)	149, 354
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	4 cut(s)	19, 22, 128, 269
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	319
HpyF3I	CTNAG	6 cut(s)	82, 131, 176, 200, 219, 306
HpySE526I	ACGT	1 cut(s)	315
HspAI	GCGC	2 cut(s)	52, 73
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	196, 261
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	48, 108, 126, 162, 200, 315
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	198, 263
MboI	GATC	2 cut(s)	196, 261
MboII	GAAGA	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	225, 321
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	3 cut(s)	139, 146, 187
MmeI	TCCRAC	1 cut(s)	128
MroI	TCCGGA	1 cut(s)	148
MspI	CCGG	4 cut(s)	35, 149, 187, 302
MspR9I	CCNGG	2 cut(s)	35, 188
MvnI	CGCG	2 cut(s)	52, 75
NciI	CCSGG	2 cut(s)	35, 188
NdeII	GATC	2 cut(s)	196, 261
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	2 cut(s)	134, 319
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	3 cut(s)	139, 146, 186
PpsI	GAGTC	3 cut(s)	139, 146, 186
Psp124BI	GAGCTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	5 cut(s)	11, 77, 189, 252, 290
SacI	GAGCTC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	196, 261
Sau96I	GGNCC	5 cut(s)	11, 77, 189, 252, 290
SchI	GAGTC	3 cut(s)	139, 146, 187
ScrFI	CCNGG	2 cut(s)	35, 188
SduI	GDGCHC	2 cut(s)	225, 321
SetI	ASST	5 cut(s)	65, 118, 186, 225, 318
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	75, 158, 240
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	33, 186
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	143, 264, 295
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	297
TauI	GCSGC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	329
TspRI	CASTG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.