Rh1CG253200

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Reverse (-)
51695251 .. 51699381
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG253200.1

Sequence Viewer

Length: 1173 bp
ATGAAGGCTTCATCATTGCAAGCACTCATCATTTCTTGCTTGACTGAAGTTATGATGTCTGAAAGCAGAAGCAGCAGTACGCAAGCAATCTGCTTATGTAATATTTGCTTCCTAATTATTTTCATCAATTTCTTCTCTCACTTTGCTCATCCACTCTCCTTCAATATAACTCAGTTCGACCAGAGTACAAAAGGAGTTGGCTTTGAAGGTGCTGCGCAGTTTTCATCGGGAAGGATTGAGCTCAACACAGGCACTTGTTTCGAGACTGGACGTGCTATTTATGCAGAGCCTATGCATCTATGGGACAATGTTACTGGGTCGCTAGCAGAATTCACTACTCATTTCACTTTCATGGTCAGCCTTGGTTCTGCTCCTAACGATAGGAGCGCCACCGATGGAATTGCCTTTTTCCTTGCTCCTGTTGGCTACGGTATTCCACCCAACTCTGGTGCTTATCGTCTGGGATTATTCAACTCCACCAACGATTTTAATGCCTTGTCCAACCAGATTGTAGCCGTAGAGTTCGACACCTGTGGAAACGGTGATTGGGATACCGCCAAGCCGCATGTTGGGATAGACATCAATAAAATCTCTTCGGTTACGTCCACCAATTGGAATACCAGTAACATCATCGGGAAGACAGGTAATGCAAGGATAATTTACAACGCTACTACCAAGAACCTTACTGTGTTTTGGACATTCGAGGAAAACACAAACCTCGTTTTTCCAGGCAATACTACTTCTTCCCTTACTTACCATGTTGACTTGCGAGAGATTCTCCCCGAAAAGGTTACAATCGGTTTTTCTGCTTCATCTGGATTAAACCCTGGACGGTTTTCTTTAAATTCATGGGCGTTTAATTCGACTTTGGTGGATAGTGATATTAGAGGAGCCGACAGCAAGGAAAAGAAGAAAAAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTGAGAAACTTGGTTATGCCTCTTCACTTCGAGCTAGTCTTGTTAGGCTACAGGAGGAGAATTTGTCAGCTATGAATACTGATCCTTGGTACTCAGCATATCACTACTTTCATCCTCCGCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

42.91

Weight (kDa)

5.88

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 52 - 292 8.1e-61 Legume lectin domain
Lectin_L-type_dom PF18483 114 - 274 2.3e-06 Legume lectin beta-barrel domain
Peptidase_M48 PF01435 303 - 384 9.9e-09 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 612
AciI CCGC 3 cut(s) 555, 563, 1121
AclWI GGATC 1 cut(s) 1079
AcsI RAATTY 4 cut(s) 329, 844, 983, 1063
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 4 cut(s) 79, 187, 948, 1094
AfiI CCNNNNNNNGG 4 cut(s) 446, 569, 612, 787
AgsI TTSAA 4 cut(s) 163, 206, 472, 983
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 2 cut(s) 727, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 4 cut(s) 241, 977, 1037, 1073
AluI AGCT 4 cut(s) 241, 977, 1037, 1073
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 1079
ApeKI GCWGC 3 cut(s) 72, 212, 1139
ApoI RAATTY 4 cut(s) 329, 844, 983, 1063
AspLEI GCGC 2 cut(s) 217, 389
AsuHPI GGTGA 2 cut(s) 554, 1160
AsuNHI GCTAGC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 84, 199, 1126
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 500
BcgI CGANNNNNNTGC 6 cut(s) 241, 275, 383, 417, 473, 507
BciT130I CCWGG 2 cut(s) 729, 828
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 4 cut(s) 323, 944, 1038, 1124
BfmI CTRYAG 1 cut(s) 1052
BfoI RGCGCY 1 cut(s) 390
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 4 cut(s) 73, 213, 563, 1140
BlsI GCNGC 4 cut(s) 74, 214, 564, 1141
Bme1390I CCNGG 2 cut(s) 729, 828
BmgBI CACGTC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 892
BmrFI CCNGG 2 cut(s) 729, 828
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 304, 985
BmtI GCTAGC 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 644
BplI GAGNNNNNCTC 2 cut(s) 762, 794
BsaBI GATNNNNATC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 361, 826, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 1052, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 446, 569, 612, 787
Bse1I ACTGG 3 cut(s) 271, 319, 621
Bse3DI GCAATG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 578
BseBI CCWGG 2 cut(s) 729, 828
BseDI CCNNGG 3 cut(s) 361, 826, 1088
BseGI GGATG 2 cut(s) 148, 1114
BseJI GATNNNNATC 1 cut(s) 578
BseLI CCNNNNNNNGG 4 cut(s) 446, 569, 612, 787
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 185, 996, 1110
BseNI ACTGG 3 cut(s) 271, 319, 621
BseRI GAGGAG 2 cut(s) 903, 1073
BseXI GCAGC 3 cut(s) 84, 199, 1126
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 4 cut(s) 446, 569, 612, 787
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 1084
BspACI CCGC 3 cut(s) 555, 563, 1121
BspCNI CTCAG 3 cut(s) 184, 997, 1109
BspLI GGNNCC 1 cut(s) 892
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 3 cut(s) 271, 319, 621
BssECI CCNNGG 3 cut(s) 361, 826, 1088
BssMI GATC 1 cut(s) 1084
BssT1I CCWWGG 2 cut(s) 361, 1088
Bst2UI CCWGG 2 cut(s) 729, 828
Bst4CI ACNGT 4 cut(s) 431, 542, 688, 834
Bst6I CTCTTC 2 cut(s) 598, 1030
BstC8I GCNNGC 3 cut(s) 21, 84, 324
BstDEI CTNAG 3 cut(s) 171, 1005, 1096
BstF5I GGATG 2 cut(s) 148, 1114
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 2 cut(s) 217, 389
BstKTI GATC 1 cut(s) 1087
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 1084
BstMWI GCNNNNNNNGC 2 cut(s) 72, 281
BstNI CCWGG 2 cut(s) 729, 828
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 727, 826
BstSFI CTRYAG 1 cut(s) 1052
BstV1I GCAGC 3 cut(s) 84, 199, 1126
BstV2I GAAGAC 1 cut(s) 644
BsuI GTATCC 1 cut(s) 544
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 2 cut(s) 148, 1114
Cac8I GCNNGC 3 cut(s) 21, 84, 324
CfoI GCGC 2 cut(s) 217, 389
Csp6I GTAC 4 cut(s) 78, 186, 947, 1093
CviAII CATG 4 cut(s) 352, 566, 758, 849
CviQI GTAC 4 cut(s) 78, 186, 947, 1093
DdeI CTNAG 3 cut(s) 171, 1005, 1096
DpnI GATC 1 cut(s) 1086
DpnII GATC 1 cut(s) 1084
DraI TTTAAA 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 598, 1030
EarI CTCTTC 2 cut(s) 598, 1030
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 361, 1088
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 727, 826
EcoT14I CCWWGG 2 cut(s) 361, 1088
EcoT22I ATGCAT 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 361, 1088
FaeI CATG 4 cut(s) 355, 569, 761, 852
FaqI GGGAC 1 cut(s) 317
FatI CATG 4 cut(s) 351, 565, 757, 848
Fnu4HI GCNGC 4 cut(s) 73, 213, 563, 1140
FokI GGATG 2 cut(s) 135, 1101
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 73, 213, 563, 1140
FspBI CTAG 4 cut(s) 323, 944, 1038, 1124
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 2 cut(s) 216, 388
GluI GCNGC 4 cut(s) 73, 213, 563, 1140
HaeII RGCGCY 1 cut(s) 390
HhaI GCGC 2 cut(s) 217, 389
Hin1II CATG 4 cut(s) 355, 569, 761, 852
Hin6I GCGC 2 cut(s) 215, 387
HinP1I GCGC 2 cut(s) 215, 387
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 1 cut(s) 775
HphI GGTGA 2 cut(s) 554, 1160
Hpy166II GTNNAC 3 cut(s) 606, 763, 949
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 4 cut(s) 228, 262, 634, 816
Hpy8I GTNNAC 3 cut(s) 606, 763, 949
HpyAV CCTTC 3 cut(s) 169, 200, 225
HpyCH4III ACNGT 4 cut(s) 431, 542, 688, 834
HpyCH4IV ACGT 2 cut(s) 271, 602
HpyCH4V TGCA 5 cut(s) 19, 284, 295, 650, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 281
HpyF3I CTNAG 3 cut(s) 171, 1005, 1096
HpySE526I ACGT 2 cut(s) 271, 602
Hsp92II CATG 4 cut(s) 355, 569, 761, 852
HspAI GCGC 2 cut(s) 215, 387
Kzo9I GATC 1 cut(s) 1084
LmnI GCTCC 4 cut(s) 376, 384, 421, 890
Lsp1109I GCAGC 3 cut(s) 84, 199, 1126
LweI GCATC 2 cut(s) 304, 985
MaeI CTAG 4 cut(s) 323, 944, 1038, 1124
MaeII ACGT 2 cut(s) 271, 602
MaeIII GTNAC 5 cut(s) 310, 598, 623, 790, 959
MalI GATC 1 cut(s) 1086
MboI GATC 1 cut(s) 1084
MboII GAAGA 6 cut(s) 124, 585, 649, 735, 922, 1017
MfeI CAATTG 2 cut(s) 610, 1143
MhlI GDGCHC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 6 cut(s) 697, 728, 881, 1033, 1051, 1128
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 4 cut(s) 489, 821, 842, 858
MslI CAYNNNNRTG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 729, 828
MunI CAATTG 2 cut(s) 610, 1143
MvaI CCWGG 2 cut(s) 729, 828
MwoI GCNNNNNNNGC 2 cut(s) 72, 281
NdeII GATC 1 cut(s) 1084
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 4 cut(s) 355, 569, 761, 852
NlaIV GGNNCC 1 cut(s) 892
NmeAIII GCCGAG 1 cut(s) 998
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 1 cut(s) 569
PfeI GAWTC 1 cut(s) 775
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 4 cut(s) 74, 214, 564, 1141
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 727, 826
PspGI CCWGG 2 cut(s) 727, 826
PspN4I GGNNCC 1 cut(s) 892
RsaI GTAC 4 cut(s) 79, 187, 948, 1094
RsaNI GTAC 4 cut(s) 78, 186, 947, 1093
RseI CAYNNNNRTG 1 cut(s) 350
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 4 cut(s) 489, 821, 842, 858
SatI GCNGC 4 cut(s) 73, 213, 563, 1140
Sau3AI GATC 1 cut(s) 1084
ScrFI CCNGG 2 cut(s) 729, 828
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 2 cut(s) 304, 985
SfcI CTRYAG 1 cut(s) 1052
SmiMI CAYNNNNRTG 1 cut(s) 350
SsiI CCGC 3 cut(s) 555, 563, 1121
SspI AATATT 1 cut(s) 103
SspMI CTAG 4 cut(s) 323, 944, 1038, 1124
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 727, 826
StyI CCWWGG 2 cut(s) 361, 1088
TaaI ACNGT 4 cut(s) 431, 542, 688, 834
TaiI ACGT 2 cut(s) 274, 605
TaqI TCGA 7 cut(s) 177, 261, 525, 702, 863, 1033, 1128
TatI WGTACW 2 cut(s) 185, 946
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 775
Tru1I TTAA 4 cut(s) 489, 821, 842, 858
Tru9I TTAA 4 cut(s) 489, 821, 842, 858
TseI GCWGC 3 cut(s) 72, 212, 1139
TspDTI ATGAA 8 cut(s) 17, 112, 213, 340, 801, 837, 1091, 1103
Van91I CCANNNNNTGG 1 cut(s) 612
XapI RAATTY 4 cut(s) 329, 844, 983, 1063
XceI RCATGY 1 cut(s) 569
XspI CTAG 4 cut(s) 323, 944, 1038, 1124
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.