Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

55960449 .. 55962531

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG287600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGTGTTGGTCAAGGATCAATGCCCATTTCTTGGATAAACTTTTTCAAGACGACTCTAATAGGGTATTATGCAAATCTCAGGCAATTTTTCCTTGCAAGGATGGCAACGTATATGGACGATTTATTGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTATTGTAGTAACCAATGACGGGAATGCCATTCTGCGAGAATTGGATCTTGCGCACCCAGCAGCAAAGGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

9.3

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	45 - 90	1.8e-16	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	33
AclWI	GGATC	2 cut(s)	25, 255
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	33, 222
AgsI	TTSAA	1 cut(s)	49
AlwI	GGATC	2 cut(s)	25, 255
ApeKI	GCWGC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	161, 168
AvaII	GGWCC	2 cut(s)	161, 168
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	2 cut(s)	161, 168
BmgT120I	GGNCC	2 cut(s)	161, 168
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	2 cut(s)	171, 181
BoxI	GACNNNNGTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	156, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 222
Bse1I	ACTGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	156, 164
BseGI	GGATG	3 cut(s)	108, 144, 196
BseLI	CCNNNNNNNGG	2 cut(s)	33, 222
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	33, 222
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	17, 247
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	25, 255
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	156, 164
BssMI	GATC	2 cut(s)	17, 247
BssT1I	CCWWGG	2 cut(s)	156, 164
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	108, 144, 196
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	20, 250
BstMBI	GATC	2 cut(s)	17, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 260, 269
BstPAI	GACNNNNGTC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	108, 144, 196
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	161, 168
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	1 cut(s)	131
CviKI_1	RGCY	1 cut(s)	131
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	19, 249
DpnII	GATC	2 cut(s)	17, 247
Eco130I	CCWWGG	2 cut(s)	156, 164
Eco47I	GGWCC	2 cut(s)	161, 168
EcoT14I	CCWWGG	2 cut(s)	156, 164
ErhI	CCWWGG	2 cut(s)	156, 164
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	72, 114, 116, 173
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	3 cut(s)	115, 131, 203
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	195
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	74, 98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 260, 269
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	17, 247
LpnPI	CCDG	3 cut(s)	67, 173, 273
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	2 cut(s)	171, 181
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	19, 249
MboI	GATC	2 cut(s)	17, 247
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	2 cut(s)	86, 242
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	104, 260, 269
NdeII	GATC	2 cut(s)	17, 247
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshAI	GACNNNNGTC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	161, 168
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	17, 247
Sau96I	GGNCC	2 cut(s)	161, 168
SchI	GAGTC	1 cut(s)	49
SetI	ASST	4 cut(s)	113, 158, 170, 205
SfaNI	GCATC	2 cut(s)	171, 181
SinI	GGWCC	2 cut(s)	161, 168
Sse9I	AATT	2 cut(s)	86, 242
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	156, 164
TaiI	ACGT	1 cut(s)	113
TasI	AATT	2 cut(s)	86, 242
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseI	GCWGC	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	161, 168
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.