Rh1CG316000
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Forward (+)
59150021 .. 59151134
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG316000.1

Sequence Viewer

Length: 366 bp
ATGAGTATGGGTGGAAAAGAAGGTCATGCAATCGGGATTGATCTCGAGACAACATATTCGTGTGTGGCAGTGTGGAAACACGACCATGTGGAAGTCATAGTGAATGAGCAGGGCAACAGAATGACTCGATCTTATGTTGCTTTCACTGATACTGAACGAATGATAGGTGATGCAGCACATAACCAAGTCATCAGAAACCCTGCAAACTCAATCTCTGATGCAAAGAGGTTAATTGGTAGAAGATTTAGTGATGCATTTGTTCAAAGTGATATTAAGCTCTGGCCCTTCCAGGTCATTAAAGGTCCTGCTGACAAGCCCATGATTGTGGTTACCCAAAAGGGTAAAGAGAAACAGTTTGCGGGCTGA
Functional Annotation

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

8.79

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 10 - 118 7.6e-38 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 359
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
AspS9I GGNCC 2 cut(s) 282, 302
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 41
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 282, 302
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 3 cut(s) 160, 208, 241
BseBI CCWGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 185
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 2 cut(s) 40, 128
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 283
BssMI GATC 2 cut(s) 40, 128
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 328
BstKTI GATC 2 cut(s) 43, 131
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 40, 128
BstNI CCWGG 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 325
BsuRI GGCC 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 144
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 282, 302
CviAII CATG 3 cut(s) 26, 86, 319
CviJI RGCY 4 cut(s) 277, 283, 316, 363
CviKI_1 RGCY 4 cut(s) 277, 283, 316, 363
DpnI GATC 2 cut(s) 42, 130
DpnII GATC 2 cut(s) 40, 128
Eco47I GGWCC 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 3 cut(s) 29, 89, 322
FaiI YATR 8 cut(s) 8, 27, 55, 87, 98, 135, 180, 320
FatI CATG 3 cut(s) 25, 85, 318
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 283
Hin1II CATG 3 cut(s) 29, 89, 322
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 194, 217
Hpy188III TCNNGA 3 cut(s) 34, 44, 46
HpyAV CCTTC 2 cut(s) 14, 295
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 5 cut(s) 29, 173, 203, 221, 254
Hsp92II CATG 3 cut(s) 29, 89, 322
Kzo9I GATC 2 cut(s) 40, 128
LpnPI CCDG 6 cut(s) 95, 213, 265, 275, 302, 318
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 3 cut(s) 160, 208, 241
MaeIII GTNAC 1 cut(s) 328
MalI GATC 2 cut(s) 42, 130
MboI GATC 2 cut(s) 40, 128
MboII GAAGA 1 cut(s) 252
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 3 cut(s) 230, 273, 297
MslI CAYNNNNRTG 3 cut(s) 58, 84, 323
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
NdeII GATC 2 cut(s) 40, 128
NlaIII CATG 3 cut(s) 29, 89, 322
NsiI ATGCAT 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 288
PspEI GGTNACC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 288
PspPI GGNCC 2 cut(s) 282, 302
PspPPI RGGWCCY 1 cut(s) 302
RseI CAYNNNNRTG 3 cut(s) 58, 84, 323
SaqAI TTAA 3 cut(s) 230, 273, 297
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 40, 128
Sau96I GGNCC 2 cut(s) 282, 302
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 290
SetI ASST 6 cut(s) 25, 169, 230, 279, 294, 304
SfaNI GCATC 3 cut(s) 160, 208, 241
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 58, 84, 323
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 45, 127
TasI AATT 1 cut(s) 231
Tru1I TTAA 3 cut(s) 230, 273, 297
Tru9I TTAA 3 cut(s) 230, 273, 297
TscAI CASTG 2 cut(s) 75, 151
TseI GCWGC 1 cut(s) 173
TspRI CASTG 2 cut(s) 75, 151
VpaK11BI GGWCC 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.