Rh1CG316200
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Forward (+)
59151500 .. 59154123
2624 bp
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UTR
Exon/CDS
Intron
Rh1CG316200.1

Sequence Viewer

Length: 702 bp
ATGGTCGATTACTGTGTTGAAGAATTCAAGAAGAAGCATAATGTGGATGTTAGTGGAAACTCCAGAGCTCTTAGGAGGTTAAGCAATGAATGTGAGAAGGCAAAGAGGAGGCTTTCGTTTACAACTACGACTGACATTGAAATTGATTGTTTGCATCATAATAATGATTTCTACATAACTATTACCCATGCCAAATTTGAACAACTCAACATGGAGTTCTTCGATAATTGTATGGAGCCTGTGAAGAAGTGTTTGAGAGATGCTAACATGAACATAAGCAGTGTCGATGATGTTGTTCTTGCTGGTGGCTCTTCTAGAATTCCCAAGGTGCAGCAGCTTTTACAGAATCTGTTTCAGGGGAAGGAACTGTGCAAGGGCATTAATCCAGATGAGGCTGTGGCATATGGTGCCGCACTTCAAGCTGCCAGTTTAAGTGGAAATGGAAAAGAGAATCTTCAAAATTTGACTCTCTTGGATGTCACCCCTCTATCACTTGGGGTGGAAGCACTACTGTTAAGTACTGGTGATCAACATTTCATGACAGTTGTGATCCCAAGAAACACAAGGACTCCAGTCAGGAAGCAGCAAGTTTTGGGATCTCCTGCTCATGACAAGCAACAGGTTGTTCGCTTCTGCATTTATGAGGGTGAGAGTGAAAGCACCTTAAATAATAATTTTTTGGGCGAATTCAGTATCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

233

Amino Acids

26.07

Weight (kDa)

5.72

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 233 9.8e-67 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AciI CCGC 1 cut(s) 411
AclWI GGATC 2 cut(s) 544, 604
AcsI RAATTY 5 cut(s) 23, 194, 318, 460, 686
AfaI GTAC 1 cut(s) 520
AgsI TTSAA 6 cut(s) 20, 28, 140, 200, 419, 458
AluBI AGCT 3 cut(s) 68, 337, 422
AluI AGCT 3 cut(s) 68, 337, 422
Alw21I GWGCWC 1 cut(s) 70
AlwI GGATC 2 cut(s) 544, 604
AlwNI CAGNNNCTG 1 cut(s) 349
ApeKI GCWGC 4 cut(s) 331, 334, 422, 583
ApoI RAATTY 5 cut(s) 23, 194, 318, 460, 686
AseI ATTAAT 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 472, 536, 659
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 4 cut(s) 343, 346, 409, 595
BclI TGATCA 1 cut(s) 526
BfaI CTAG 1 cut(s) 315
BisI GCNGC 5 cut(s) 332, 335, 411, 423, 584
BlsI GCNGC 5 cut(s) 333, 336, 412, 424, 585
BmcAI AGTACT 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 237, 409
BmsI GCATC 2 cut(s) 163, 250
BoxI GACNNNNGTC 1 cut(s) 572
BpmI CTGGAG 2 cut(s) 46, 555
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bse1I ACTGG 3 cut(s) 426, 526, 572
Bse3DI GCAATG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 52, 481
BseMI GCAATG 1 cut(s) 91
BseNI ACTGG 3 cut(s) 426, 526, 572
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 4 cut(s) 343, 346, 409, 595
BsgI GTGCAG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 526, 549, 596
BspACI CCGC 1 cut(s) 411
BspHI TCATGA 2 cut(s) 537, 607
BspLI GGNNCC 2 cut(s) 237, 409
BspPI GGATC 2 cut(s) 544, 604
BspQI GCTCTTC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 3 cut(s) 426, 526, 572
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 526, 549, 596
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 4 cut(s) 14, 369, 513, 544
Bst6I CTCTTC 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 52, 481
BstKTI GATC 3 cut(s) 529, 552, 599
BstMBI GATC 3 cut(s) 526, 549, 596
BstMWI GCNNNNNNNGC 2 cut(s) 407, 419
BstPAI GACNNNNGTC 1 cut(s) 572
BstV1I GCAGC 4 cut(s) 343, 346, 409, 595
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BtsCI GGATG 2 cut(s) 52, 481
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 349
CciI TCATGA 2 cut(s) 537, 607
Csp6I GTAC 1 cut(s) 519
CviAII CATG 5 cut(s) 188, 211, 268, 538, 608
CviJI RGCY 7 cut(s) 68, 112, 238, 309, 337, 395, 422
CviKI_1 RGCY 7 cut(s) 68, 112, 238, 309, 337, 395, 422
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 528, 551, 598
DpnII GATC 3 cut(s) 526, 549, 596
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 68
EcoRI GAATTC 3 cut(s) 23, 318, 686
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 5 cut(s) 191, 214, 271, 541, 611
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 5 cut(s) 187, 210, 267, 537, 607
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 5 cut(s) 332, 335, 411, 423, 584
FokI GGATG 2 cut(s) 59, 488
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 5 cut(s) 332, 335, 411, 423, 584
FspBI CTAG 1 cut(s) 315
GluI GCNGC 5 cut(s) 332, 335, 411, 423, 584
GsuI CTGGAG 2 cut(s) 46, 555
Hin1II CATG 5 cut(s) 191, 214, 271, 541, 611
HinfI GANTC 4 cut(s) 346, 451, 466, 568
HphI GGTGA 3 cut(s) 472, 536, 659
Hpy166II GTNNAC 1 cut(s) 120
Hpy188III TCNNGA 7 cut(s) 28, 63, 315, 386, 538, 577, 608
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 2 cut(s) 91, 355
HpyCH4III ACNGT 4 cut(s) 14, 369, 513, 544
HpyCH4V TGCA 4 cut(s) 154, 331, 372, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 419
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 5 cut(s) 191, 214, 271, 541, 611
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 3 cut(s) 526, 549, 596
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 4 cut(s) 343, 346, 409, 595
LweI GCATC 2 cut(s) 163, 250
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 478
MalI GATC 3 cut(s) 528, 551, 598
MboI GATC 3 cut(s) 526, 549, 596
MboII GAAGA 6 cut(s) 32, 43, 211, 256, 303, 446
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 8 cut(s) 23, 141, 194, 226, 318, 460, 673, 686
MlyI GAGTC 2 cut(s) 460, 562
MnlI CCTC 6 cut(s) 69, 99, 102, 385, 495, 637
MseI TTAA 5 cut(s) 80, 381, 431, 515, 665
MslI CAYNNNNRTG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 407, 419
NdeI CATATG 1 cut(s) 403
NdeII GATC 3 cut(s) 526, 549, 596
NlaIII CATG 5 cut(s) 191, 214, 271, 541, 611
NlaIV GGNNCC 2 cut(s) 237, 409
NmuCI GTSAC 1 cut(s) 478
PagI TCATGA 2 cut(s) 537, 607
PciSI GCTCTTC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 346, 451
PkrI GCNGC 5 cut(s) 333, 336, 412, 424, 585
PleI GAGTC 2 cut(s) 460, 562
PpsI GAGTC 2 cut(s) 460, 562
PshAI GACNNNNGTC 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 237, 409
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 596
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 5 cut(s) 80, 381, 431, 515, 665
SatI GCNGC 5 cut(s) 332, 335, 411, 423, 584
Sau3AI GATC 3 cut(s) 526, 549, 596
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 2 cut(s) 460, 562
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 70, 80, 330, 339, 424, 624, 665
SfaNI GCATC 2 cut(s) 163, 250
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 8 cut(s) 23, 141, 194, 226, 318, 460, 673, 686
SsiI CCGC 1 cut(s) 411
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 70
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 14, 369, 513, 544
TaqI TCGA 4 cut(s) 6, 222, 285, 696
TasI AATT 8 cut(s) 23, 141, 194, 226, 318, 460, 673, 686
TatI WGTACW 1 cut(s) 518
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 346, 451
Tru1I TTAA 5 cut(s) 80, 381, 431, 515, 665
Tru9I TTAA 5 cut(s) 80, 381, 431, 515, 665
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 4 cut(s) 331, 334, 422, 583
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 102, 284, 526
TspRI CASTG 1 cut(s) 286
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 5 cut(s) 23, 194, 318, 460, 686
XbaI TCTAGA 1 cut(s) 314
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.