Rh1CG316900
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
N/A
Physical Location & Seq
Forward (+)
59197017 .. 59198846
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG316900.1

Sequence Viewer

Length: 864 bp
ATGAGTCATGGCAGTATCAATGAGAGTAGAGATCATGGGCACTGGACAGTGGACAGACGTGTAATTGTTCTAGACTTCTACTTAAAAATGGGTTCAAATCGTTTAAAAAAGAAGCAGCAGCCAGACAACAATATCCCACTACAAATGGGTTTAAATCACATCAGCGTTGGAACTCAGAAGGCTCTATACGCAAGGGGAAAAACCTTGGTAGGTGATGCAGCACTTGACCAGATTATCCGAAACCCCGCCAACACCATTTTTGATGCAAAGAGGTTAATTGGCAGGAGGTTCAGTGATGCTTCTGTTCAAAATGACATGAAGCTCTGGCCATTCAAGGTTACTAAAGGTCCCGAGGACAAGCCTATGATTGTGGTTACCCAGGAAGAAAAAAGTTTTTCTGCTGAGGAAATCTCATCCATGGTTCTTTCAAAGATGCGGGAGGTTGCTGAGGCTTACCTCGGCTCAACTGTGAAGAGCGCAGTTATCACTGCCCCTGCATACTTCAATAATTCACAGCGGCAGGATACATATGATGCAGGTACTACCGCTGGCCTAAATGTGATGCGTATAATAAATGAACCAACTGCCGCAGCAATTGCTTATGGCCTTAACAAGAAAACTGGCTGGTATAGCAAGAGAAATGTGGTAATATTTGATTTGGGAGGTGGTACTATAGATGTGTCGCTGCTTAGCATAGGGGATGATGTTTTTGAAATTAAGGCCACTTCTGGAGACACTCATCTCGGAGATGAAGACTTTGATAACAAAATGGTGGGTTATATTGTGTTGAGGAATTTAAGAGAAGCATCAATTGGACGTCAGTGGGAACTCCAGAGCTCTAAGGAGGATAAGAAATGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

287

Amino Acids

31.95

Weight (kDa)

8.76

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 63 - 266 6.4e-85 Hsp70 protein
MreB_Mbl PF06723 144 - 261 1.6e-08 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 820
Acc36I ACCTGC 1 cut(s) 527
AciI CCGC 5 cut(s) 246, 436, 517, 546, 588
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 817
AfaI GTAC 2 cut(s) 541, 670
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 6 cut(s) 96, 308, 334, 429, 505, 713
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
AluBI AGCT 2 cut(s) 322, 837
AluI AGCT 2 cut(s) 322, 837
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 1 cut(s) 726
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 4 cut(s) 326, 550, 604, 720
ApeKI GCWGC 5 cut(s) 115, 118, 218, 590, 685
ApoI RAATTY 1 cut(s) 793
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 42
BalI TGGCCA 1 cut(s) 328
BanII GRGCYC 1 cut(s) 839
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 839
BbvCI CCTCAGC 2 cut(s) 402, 447
BbvI GCAGC 5 cut(s) 127, 130, 230, 602, 672
BciT130I CCWGG 1 cut(s) 380
BciVI GTATCC 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 527
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 7 cut(s) 116, 119, 219, 518, 588, 591, 686
BlpI GCTNAGC 1 cut(s) 689
BlsI GCNGC 7 cut(s) 117, 120, 220, 519, 589, 592, 687
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 7 cut(s) 205, 253, 286, 423, 523, 552, 815
BpiI GAAGAC 1 cut(s) 759
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 2 cut(s) 750, 815
Bpu10I CCTNAGC 2 cut(s) 402, 447
Bpu1102I GCTNAGC 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 817
BsaJI CCNNGG 5 cut(s) 204, 351, 378, 417, 457
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse1I ACTGG 2 cut(s) 47, 625
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 5 cut(s) 204, 351, 378, 417, 457
BseGI GGATG 2 cut(s) 413, 706
BseMII CTCAG 3 cut(s) 188, 393, 438
BseNI ACTGG 2 cut(s) 47, 625
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 5 cut(s) 127, 130, 230, 602, 672
BshFI GGCC 4 cut(s) 328, 552, 606, 722
BsiHKAI GWGCWC 1 cut(s) 839
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 4 cut(s) 328, 552, 606, 722
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 42, 839
Bsp143I GATC 1 cut(s) 31
Bsp1720I GCTNAGC 1 cut(s) 689
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 5 cut(s) 246, 436, 517, 546, 588
BspANI GGCC 4 cut(s) 328, 552, 606, 722
BspCNI CTCAG 3 cut(s) 187, 394, 439
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 467
BsrI ACTGG 2 cut(s) 47, 625
BssECI CCNNGG 5 cut(s) 204, 351, 378, 417, 457
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 817
BssT1I CCWWGG 2 cut(s) 204, 417
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 49, 469
Bst6I CTCTTC 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 817
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 5 cut(s) 174, 402, 447, 689, 840
BstDSI CCRYGG 1 cut(s) 417
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 2 cut(s) 413, 706
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 188, 596, 630
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 862
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 127, 130, 230, 602, 672
BstV2I GAAGAC 1 cut(s) 759
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 4 cut(s) 328, 552, 606, 722
BtgI CCRYGG 1 cut(s) 417
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 2 cut(s) 413, 706
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 5 cut(s) 40, 54, 298, 486, 827
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 540, 669
CviAII CATG 5 cut(s) 8, 35, 316, 418, 859
CviQI GTAC 2 cut(s) 540, 669
DdeI CTNAG 5 cut(s) 174, 402, 447, 689, 840
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraI TTTAAA 2 cut(s) 105, 153
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Ecl136II GAGCTC 1 cut(s) 837
Eco130I CCWWGG 2 cut(s) 204, 417
Eco24I GRGCYC 1 cut(s) 839
Eco47I GGWCC 1 cut(s) 347
Eco53kI GAGCTC 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 350
Eco91I GGTNACC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 204, 417
EcoT22I ATGCAT 1 cut(s) 860
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 2 cut(s) 204, 417
FaeI CATG 5 cut(s) 11, 38, 319, 421, 862
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 7, 34, 315, 417, 858
FauI CCCGC 2 cut(s) 253, 429
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 7 cut(s) 116, 119, 219, 518, 588, 591, 686
FokI GGATG 2 cut(s) 400, 713
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 7 cut(s) 116, 119, 219, 518, 588, 591, 686
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 478
GluI GCNGC 7 cut(s) 116, 119, 219, 518, 588, 591, 686
GsuI CTGGAG 2 cut(s) 750, 815
HaeIII GGCC 4 cut(s) 328, 552, 606, 722
HhaI GCGC 1 cut(s) 479
Hin1I GRCGYC 1 cut(s) 817
Hin1II CATG 5 cut(s) 11, 38, 319, 421, 862
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 177, 239, 746
Hpy188III TCNNGA 4 cut(s) 71, 350, 729, 832
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 49, 469
HpyCH4IV ACGT 2 cut(s) 58, 817
HpyCH4V TGCA 5 cut(s) 218, 266, 497, 536, 858
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 596, 630
HpyF3I CTNAG 5 cut(s) 174, 402, 447, 689, 840
HpySE526I ACGT 2 cut(s) 58, 817
Hsp92I GRCGYC 1 cut(s) 817
Hsp92II CATG 5 cut(s) 11, 38, 319, 421, 862
HspAI GCGC 1 cut(s) 477
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 467
Lsp1109I GCAGC 5 cut(s) 127, 130, 230, 602, 672
LweI GCATC 7 cut(s) 205, 253, 286, 423, 523, 552, 815
MaeI CTAG 1 cut(s) 71
MaeII ACGT 2 cut(s) 58, 817
MaeIII GTNAC 2 cut(s) 337, 373
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 3 cut(s) 395, 484, 764
MfeI CAATTG 2 cut(s) 594, 810
MhlI GDGCHC 2 cut(s) 42, 839
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 7 cut(s) 63, 276, 508, 594, 714, 793, 810
MluNI TGGCCA 1 cut(s) 328
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 860
MscI TGGCCA 1 cut(s) 328
MseI TTAA 7 cut(s) 83, 104, 152, 275, 609, 717, 797
Msp20I TGGCCA 1 cut(s) 328
MspA1I CMGCKG 2 cut(s) 517, 548
MspR9I CCNGG 1 cut(s) 380
MunI CAATTG 2 cut(s) 594, 810
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 188, 596, 630
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 529
NdeII GATC 1 cut(s) 31
NlaIII CATG 5 cut(s) 11, 38, 319, 421, 862
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 860
NspI RCATGY 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 467
PkrI GCNGC 7 cut(s) 117, 120, 220, 519, 589, 592, 687
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 839
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
RsaI GTAC 2 cut(s) 541, 670
RsaNI GTAC 2 cut(s) 540, 669
SacI GAGCTC 1 cut(s) 839
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 7 cut(s) 83, 104, 152, 275, 609, 717, 797
SatI GCNGC 7 cut(s) 116, 119, 219, 518, 588, 591, 686
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 42, 839
SfaNI GCATC 7 cut(s) 205, 253, 286, 423, 523, 552, 815
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 347
Sse9I AATT 7 cut(s) 63, 276, 508, 594, 714, 793, 810
SsiI CCGC 5 cut(s) 246, 436, 517, 546, 588
SspI AATATT 1 cut(s) 651
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 204, 417
TaaI ACNGT 2 cut(s) 49, 469
TaiI ACGT 2 cut(s) 61, 820
TasI AATT 7 cut(s) 63, 276, 508, 594, 714, 793, 810
TauI GCSGC 2 cut(s) 520, 590
Tru1I TTAA 7 cut(s) 83, 104, 152, 275, 609, 717, 797
Tru9I TTAA 7 cut(s) 83, 104, 152, 275, 609, 717, 797
TscAI CASTG 5 cut(s) 47, 54, 298, 493, 827
TseI GCWGC 5 cut(s) 115, 118, 218, 590, 685
TspDTI ATGAA 3 cut(s) 332, 591, 765
TspRI CASTG 5 cut(s) 47, 54, 298, 493, 827
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 793
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 862
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 818
Zsp2I ATGCAT 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.